WormBase Tree Display for Gene: WBGene00009661
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WBGene00009661 | SMap | S_parent | Sequence | CHROMOSOME_II | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | patr | |||||
Allele (53) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation (11) | ||||||
Contained_in_operon | CEOP2576 | |||||
Ortholog (35) | ||||||
Structured_description | Concise_description | patr-1 encodes the C. elegans ortholog of the Saccharomyces cerevisiae decapping activator Pat1p; patr-1 is involved in decapping-mediated mRNA decay and is required for proper recruitment of several components of P-bodies, cytoplasmic mRNA processing bodies; in C. elegans, patr-1 is an essential gene, required for embryonic and larval development, as well as wild-type brood sizes; PATR-1 localizes to P-bodies. | Paper_evidence | WBPaper00032091 | ||
WBPaper00032097 | ||||||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 07 Jul 2010 00:00:00 | |||||
Automated_description | Predicted to enable RNA binding activity. Involved in determination of adult lifespan. Located in P-body. Is an ortholog of human PATL1 (PAT1 homolog 1, processing body mRNA decay factor) and PATL2 (PAT1 homolog 2). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Potential_model | EFO:MONDO:0014769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:33630) | |
Molecular_info | Corresponding_CDS | F43G6.9 | ||||
Corresponding_transcript | F43G6.9.1 | |||||
Other_sequence (24) | ||||||
Associated_feature | WBsf650622 | |||||
WBsf976357 | ||||||
WBsf976358 | ||||||
WBsf976359 | ||||||
WBsf976360 | ||||||
WBsf976361 | ||||||
WBsf223998 | ||||||
WBsf223999 | ||||||
WBsf224000 | ||||||
Experimental_info | RNAi_result (12) | |||||
Expr_pattern | Expr8554 | |||||
Expr1017358 | ||||||
Expr1034220 | ||||||
Expr1151074 | ||||||
Expr2014755 | ||||||
Expr2032989 | ||||||
Drives_construct | WBCnstr00032016 | |||||
Construct_product | WBCnstr00005581 | |||||
WBCnstr00005590 | ||||||
WBCnstr00032016 | ||||||
Antibody | WBAntibody00001619 | |||||
WBAntibody00001622 | ||||||
Microarray_results (23) | ||||||
Expression_cluster (156) | ||||||
Interaction (127) | ||||||
Map_info | Map | II | Position | 4.04727 | ||
Positive | Positive_clone | F43G6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00032091 | |||||
WBPaper00032097 | ||||||
WBPaper00038491 | ||||||
WBPaper00041859 | ||||||
WBPaper00045542 | ||||||
WBPaper00050743 | ||||||
WBPaper00055090 | ||||||
WBPaper00059203 | ||||||
WBPaper00064886 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
[140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | ||||||
Method | Gene |