WormBase Tree Display for Gene: WBGene00009661
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WBGene00009661 | SMap | S_parent | Sequence | CHROMOSOME_II | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | patr-1 | Person_evidence | WBPerson1787 | |||
Sequence_name | F43G6.9 | ||||||
Molecular_name | F43G6.9 | ||||||
F43G6.9.1 | |||||||
CE18675 | |||||||
Other_name | CELE_F43G6.9 | Accession_evidence | NDB | BX284602 | |||
Public_name | patr-1 | ||||||
DB_info | Database | AceView | gene | 2M66 | |||
WormQTL | gene | WBGene00009661 | |||||
WormFlux | gene | WBGene00009661 | |||||
NDB | locus_tag | CELE_F43G6.9 | |||||
Panther | gene | CAEEL|WormBase=WBGene00009661|UniProtKB=Q20374 | |||||
family | PTHR21551 | ||||||
NCBI | gene | 174808 | |||||
RefSeq | protein | NM_064113.7 | |||||
SwissProt | UniProtAcc | Q20374 | |||||
UniProt_GCRP | UniProtAcc | Q20374 | |||||
OMIM | gene | 614661 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | patr | ||||||
Allele (53) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Contained_in_operon | CEOP2576 | ||||||
Ortholog (35) | |||||||
Structured_description | Concise_description | patr-1 encodes the C. elegans ortholog of the Saccharomyces cerevisiae decapping activator Pat1p; patr-1 is involved in decapping-mediated mRNA decay and is required for proper recruitment of several components of P-bodies, cytoplasmic mRNA processing bodies; in C. elegans, patr-1 is an essential gene, required for embryonic and larval development, as well as wild-type brood sizes; PATR-1 localizes to P-bodies. | Paper_evidence | WBPaper00032091 | |||
WBPaper00032097 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 07 Jul 2010 00:00:00 | ||||||
Automated_description | Predicted to enable RNA binding activity. Involved in determination of adult lifespan. Located in P-body. Is an ortholog of human PATL1 (PAT1 homolog 1, processing body mRNA decay factor) and PATL2 (PAT1 homolog 2). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | EFO:MONDO:0014769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:33630) | ||
Molecular_info | Corresponding_CDS | F43G6.9 | |||||
Corresponding_transcript | F43G6.9.1 | ||||||
Other_sequence (24) | |||||||
Associated_feature | WBsf650622 | ||||||
WBsf976357 | |||||||
WBsf976358 | |||||||
WBsf976359 | |||||||
WBsf976360 | |||||||
WBsf976361 | |||||||
WBsf223998 | |||||||
WBsf223999 | |||||||
WBsf224000 | |||||||
Experimental_info | RNAi_result (12) | ||||||
Expr_pattern | Expr8554 | ||||||
Expr1017358 | |||||||
Expr1034220 | |||||||
Expr1151074 | |||||||
Expr2014755 | |||||||
Expr2032989 | |||||||
Drives_construct | WBCnstr00032016 | ||||||
Construct_product | WBCnstr00005581 | ||||||
WBCnstr00005590 | |||||||
WBCnstr00032016 | |||||||
Antibody | WBAntibody00001619 | ||||||
WBAntibody00001622 | |||||||
Microarray_results (23) | |||||||
Expression_cluster (156) | |||||||
Interaction (127) | |||||||
Map_info | Map | II | Position | 4.04727 | |||
Positive | Positive_clone | F43G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00032091 | ||||||
WBPaper00032097 | |||||||
WBPaper00038491 | |||||||
WBPaper00041859 | |||||||
WBPaper00045542 | |||||||
WBPaper00050743 | |||||||
WBPaper00055090 | |||||||
WBPaper00059203 | |||||||
WBPaper00064886 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
[140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||
Method | Gene |