WormBase Tree Display for Gene: WBGene00009661

WBGene00009661 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: patr-1 Person_evidence: WBPerson1787
      Sequence_name: F43G6.9
      Molecular_name: F43G6.9
        F43G6.9.1
        CE18675
      Other_name: CELE_F43G6.9 Accession_evidence: NDB BX284602
      Public_name: patr-1
    DB_info: Database: AceView gene 2M66
        WormQTL gene WBGene00009661
        WormFlux gene WBGene00009661
        NDB locus_tag CELE_F43G6.9
        Panther gene CAEEL|WormBase=WBGene00009661|UniProtKB=Q20374
          family PTHR21551
        NCBI gene 174808
        RefSeq protein NM_064113.7
        SwissProt UniProtAcc Q20374
        UniProt_GCRP UniProtAcc Q20374
        OMIM gene 614661
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Apr 2005 11:05:24 WBPerson2970 Name_change: CGC_name: patr-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: patr
    Allele (53)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP2576
    Ortholog: WBGene00053349 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00026051 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
      WBGene00149242 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00112197 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00124183 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00190176 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00224324 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g7102 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11867 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17024 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21810 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16851 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1998 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g18868 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16051 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00334.g9360 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-patr-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold458.g1406 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00086.g3833 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09359 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005559 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g1737 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20311500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6032 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248071 Onchocerca volvulus From_analysis: WormBase-Compara
      SGD:S000000673 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
      FB:FBgn0266053 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-121214-350 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-070209-83 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:33630 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:26721 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1914828 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:2147679 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1305514 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1307887 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
    Structured_description: Concise_description: patr-1 encodes the C. elegans ortholog of the Saccharomyces cerevisiae decapping activator Pat1p; patr-1 is involved in decapping-mediated mRNA decay and is required for proper recruitment of several components of P-bodies, cytoplasmic mRNA processing bodies; in C. elegans, patr-1 is an essential gene, required for embryonic and larval development, as well as wild-type brood sizes; PATR-1 localizes to P-bodies. Paper_evidence: WBPaper00032091
            WBPaper00032097
          Curator_confirmed: WBPerson1843
          Date_last_updated: 07 Jul 2010 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Involved in determination of adult lifespan. Located in P-body. Is an ortholog of human PATL1 (PAT1 homolog 1, processing body mRNA decay factor) and PATL2 (PAT1 homolog 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: EFO:MONDO:0014769 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:33630)
  Molecular_info: Corresponding_CDS: F43G6.9
    Corresponding_transcript: F43G6.9.1
    Other_sequence (24)
    Associated_feature: WBsf650622
      WBsf976357
      WBsf976358
      WBsf976359
      WBsf976360
      WBsf976361
      WBsf223998
      WBsf223999
      WBsf224000
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr8554
      Expr1017358
      Expr1034220
      Expr1151074
      Expr2014755
      Expr2032989
    Drives_construct: WBCnstr00032016
    Construct_product: WBCnstr00005581
      WBCnstr00005590
      WBCnstr00032016
    Antibody: WBAntibody00001619
      WBAntibody00001622
    Microarray_results (23)
    Expression_cluster (156)
    Interaction (127)
  Map_info: Map: II Position: 4.04727
    Positive: Positive_clone: F43G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032091
    WBPaper00032097
    WBPaper00038491
    WBPaper00041859
    WBPaper00045542
    WBPaper00050743
    WBPaper00055090
    WBPaper00059203
    WBPaper00064886
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods.
  Method: Gene