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WormBase Tree Display for Gene: WBGene00009580

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Name Class

WBGene00009580SMapS_parentSequenceF40F9
IdentityVersion2
NameCGC_namexbx-6Person_evidenceWBPerson641
WBPerson3089
Sequence_nameF40F9.1
Molecular_nameF40F9.1a
F40F9.1a.1
CE31343
F40F9.1b
CE31344
F40F9.1a.2
F40F9.1b.1
F40F9.1b.2
F40F9.1b.3
F40F9.1c
Other_nameCELE_F40F9.1Accession_evidenceNDBBX284605
Public_namexbx-6
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Apr 2005 11:05:24WBPerson2970Name_changeCGC_namexbx-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxbx
AlleleWBVar01038301
WBVar01038302
WBVar01038303
WBVar01038304
WBVar01038305
WBVar01038306
WBVar01038307
WBVar01038308
WBVar01038309
WBVar01038310
WBVar01038311
WBVar01038312
WBVar01038313
WBVar01038314
WBVar01038315
WBVar01038316
WBVar01038317
WBVar01038318
WBVar01038319
WBVar01038320
WBVar01038321
WBVar01038322
WBVar01499355
WBVar01499356
WBVar00467150
WBVar00467151
WBVar00467152
WBVar00467153
WBVar00467154
WBVar01500129
WBVar02060482
WBVar01484504
WBVar02136915
WBVar01499056
WBVar00213867
WBVar01570618
WBVar01742802
WBVar00092127
WBVar02115418
WBVar02115419
WBVar01863542
WBVar01863543
WBVar01863544
WBVar01863545
WBVar01863546
WBVar01863547
WBVar01038284
WBVar01863548
WBVar01499316
WBVar01496003
WBVar01038285
WBVar01863549
WBVar01038286
WBVar01863550
WBVar01863551
WBVar01038287
WBVar01863552
WBVar01038288
WBVar01863553
WBVar01038289
WBVar01863554
WBVar01038290
WBVar01863555
WBVar01038291
WBVar01038292
WBVar01863556
WBVar01038293
WBVar01038294
WBVar01038295
WBVar01038296
WBVar01038297
WBVar00145628
WBVar01038298
WBVar01038299
WBVar01038300
StrainWBStrain00001364
WBStrain00029250
WBStrain00031668
RNASeq_FPKM (74)
GO_annotation00084480
00084481
00084482
00084483
00084484
00084485
OrthologWBGene00062860Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00038588Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00148497Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134116Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00097622Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00027502Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224230Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g764Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2037Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2313Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4803Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18345Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g3336Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8215Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7943Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9008Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23794Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00289.g8566Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g20278Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20894Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17636Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00259.g8141Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08586Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016976Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00058Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21774Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50254400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15315Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243225Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00264187Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294432Trichuris murisFrom_analysisWormBase-Compara
WBGene00302841Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0025692Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0013305Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0038209Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-040426-1367Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041010-69Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-050320-88Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-060616-231Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-070912-289Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
SonicParanoid
HGNC:4589Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:17067Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:23410Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1913418Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1919643Mus musculusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:628744Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:628873Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1359409Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00006470Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006479Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019664Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021537Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Expressed in neurons; pharyngeal muscle cell; tail; and ventral nerve cord. Is an ortholog of human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF40F9.1a
F40F9.1b
Corresponding_CDS_historyF40F9.1:wp82
Corresponding_transcriptF40F9.1c
F40F9.1a.1
F40F9.1a.2
F40F9.1b.1
F40F9.1b.2
F40F9.1b.3
Other_sequence (53)
Associated_featureWBsf232286
WBsf232287
WBsf232288
Experimental_infoRNAi_result (11)
Expr_patternExpr3290
Expr3484
Expr6014
Expr10142
Expr1023948
Expr1034192
Expr1150748
Expr2018094
Expr2036232
Drives_constructWBCnstr00002254
WBCnstr00011287
WBCnstr00011417
Microarray_results (35)
Expression_cluster (113)
Interaction (27)
Map_infoMapVPosition2.08834Error0.005872
PositivePositive_cloneF40F9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5142
Pseudo_map_position
ReferenceWBPaper00025051
WBPaper00032078
WBPaper00038491
WBPaper00055090
WBPaper00059097
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene