WormBase Tree Display for Gene: WBGene00009580

WBGene00009580 SMap: S_parent: Sequence: F40F9
  Identity: Version: 2
    Name: CGC_name: xbx-6 Person_evidence: WBPerson641
            WBPerson3089
      Sequence_name: F40F9.1
      Molecular_name: F40F9.1a
        F40F9.1a.1
        CE31343
        F40F9.1b
        CE31344
        F40F9.1a.2
        F40F9.1b.1
        F40F9.1b.2
        F40F9.1b.3
        F40F9.1c
      Other_name: CELE_F40F9.1 Accession_evidence: NDB BX284605
      Public_name: xbx-6
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Apr 2005 11:05:24 WBPerson2970 Name_change: CGC_name: xbx-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: xbx
    Allele (75)
    Strain: WBStrain00001364
      WBStrain00029250
      WBStrain00031668
    RNASeq_FPKM (74)
    GO_annotation: 00084480
      00084481
      00084482
      00084483
      00084484
      00084485
    Ortholog: WBGene00062860 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00038588 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00148497 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00134116 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00097622 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00027502 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00224230 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g764 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2037 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2313 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4803 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18345 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3336 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8215 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7943 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9008 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23794 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00289.g8566 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g20278 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_V.g20894 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g17636 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00259.g8141 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08586 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016976 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00058 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21774 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50254400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15315 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243225 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00264187 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294432 Trichuris muris From_analysis: WormBase-Compara
      WBGene00302841 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0025692 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            SonicParanoid
      FB:FBgn0013305 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            SonicParanoid
      FB:FBgn0038209 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1367 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-041010-69 Danio rerio From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-050320-88 Danio rerio From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-060616-231 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-070912-289 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:4589 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:17067 Homo sapiens From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:23410 Homo sapiens From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1913418 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1919643 Mus musculus From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:628744 Rattus norvegicus From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:628873 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1359409 Rattus norvegicus From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00006470 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006479 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019664 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021537 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Expressed in neurons; pharyngeal muscle cell; tail; and ventral nerve cord. Is an ortholog of human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F40F9.1a
      F40F9.1b
    Corresponding_CDS_history: F40F9.1:wp82
    Corresponding_transcript: F40F9.1c
      F40F9.1a.1
      F40F9.1a.2
      F40F9.1b.1
      F40F9.1b.2
      F40F9.1b.3
    Other_sequence (53)
    Associated_feature: WBsf232286
      WBsf232287
      WBsf232288
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr3290
      Expr3484
      Expr6014
      Expr10142
      Expr1023948
      Expr1034192
      Expr1150748
      Expr2018094
      Expr2036232
    Drives_construct: WBCnstr00002254
      WBCnstr00011287
      WBCnstr00011417
    Microarray_results (35)
    Expression_cluster (113)
    Interaction (27)
  Map_info: Map: V Position: 2.08834 Error: 0.005872
    Positive: Positive_clone: F40F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5142
    Pseudo_map_position
  Reference: WBPaper00025051
    WBPaper00032078
    WBPaper00038491
    WBPaper00055090
    WBPaper00059097
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene