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WormBase Tree Display for Gene: WBGene00009304

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Name Class

WBGene00009304SMapS_parentSequenceF32A7
IdentityVersion3
NameCGC_nameeva-1Paper_evidenceWBPaper00031043
Person_evidenceWBPerson2189
WBPerson893
Sequence_nameF32A7.3
Molecular_name (12)
Other_nametag-271
CELE_F32A7.3Accession_evidenceNDBBX284601
Public_nameeva-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
222 Apr 2005 11:55:18WBPerson2970Name_changeCGC_nametag-271
309 Oct 2007 15:40:26WBPerson2970Name_changeCGC_nameeva-1
Other_nametag-271
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classeva
Allele (99)
StrainWBStrain00036134
WBStrain00054912
RNASeq_FPKM (74)
GO_annotation00002163
00101597
00101598
00101599
00101600
00101601
00101602
00117029
OrthologWBGene00060894Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00038875Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00121086Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00224007Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9400Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5570Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5872Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8245Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8348Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26063Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9278Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14407Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1807Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9426Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00709.g13596Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-eva-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold572.g4308Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01500.g21306Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21223Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001448Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05966Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4940Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10001900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g2976Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237076Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00278622Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262157Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0259821Drosophila melanogasterFrom_analysisHieranoid
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-091204-329Danio rerioFrom_analysisOrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-100922-203Danio rerioFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
HGNC:13239Homo sapiensFrom_analysisInparanoid
OrthoInspector
Panther
PhylomeDB
MGI:1918217Mus musculusFrom_analysisInparanoid
OrthoInspector
Panther
RGD:1307569Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
Panther
ParalogWBGene00002251Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00002252Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00007664Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00014035Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015735Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017947Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017948Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioneva-1 encodes, by alternative splicing, two isoforms of a cell-surface protein that acts cell-autonomously with SAX-3 as a SLT-1 receptor subunit, and is required for guidance of the AVM pioneer axon to the ventral nerve cord; EVA-1's long isoform is predicted to have a signal sequence, an ectodomain with two lectinlike galactose-binding sequences, a single transmembrane sequence, and a cytodomain with a phosphotyrosine binding motif; homologs of EVA-1 include human C21orf63; EVA-1 is expressed in embryonic neurons during axonal growth, head and tail neurons, the ventral nerve cord, pharyngeal and body wall muscles, hypodermis, uterus and vulva; ectopic EVA-1 expression in touch-receptor neurons causes the cell body of ALM to be displaced anteriorly (due to failed posterior migration) in a SLT-1-dependent manner; the cytodomain of EVA-1 is functionally dispensable in vivo; eva-1 mutants enhance the ventral-axon guidance defects of unc-40 mutants; EVA-1, SLT-1, and SAX-3 bind one another in vitro.Paper_evidenceWBPaper00031043
Curator_confirmedWBPerson567
Date_last_updated29 Dec 2007 00:00:00
Automated_descriptionPredicted to enable carbohydrate binding activity. Located in M band; cell junction; and striated muscle dense body. Expressed in body wall musculature; hypodermis; pharyngeal muscle cell; and ventral nerve cord. Is an ortholog of human EVA1C (eva-1 homolog C).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF32A7.3a
F32A7.3b
F32A7.3c
Corresponding_CDS_historyF32A7.3a:wp114
F32A7.3b:wp114
Corresponding_transcriptF32A7.3a.1
F32A7.3b.1
F32A7.3b.2
F32A7.3b.3
F32A7.3b.4
F32A7.3c.1
Other_sequenceOden_isotig19651
FD514519.1
CJC06290_1
CRC10951_1
CBC04911_1
CSC00310_1
Associated_feature (13)
Experimental_infoRNAi_resultWBRNAi00109732Inferred_automaticallyRNAi_primary
WBRNAi00066624Inferred_automaticallyRNAi_primary
WBRNAi00046088Inferred_automaticallyRNAi_primary
WBRNAi00109779Inferred_automaticallyRNAi_primary
WBRNAi00109638Inferred_automaticallyRNAi_primary
WBRNAi00101830Inferred_automaticallyRNAi_primary
WBRNAi00031650Inferred_automaticallyRNAi_primary
WBRNAi00116608Inferred_automaticallyRNAi_primary
WBRNAi00003551Inferred_automaticallyRNAi_primary
WBRNAi00109685Inferred_automaticallyRNAi_primary
Expr_patternExpr4895
Expr9367
Expr1015991
Expr1034065
Expr1149975
Expr2011386
Expr2029622
Drives_constructWBCnstr00012316
WBCnstr00019877
WBCnstr00032298
Construct_productWBCnstr00012316
WBCnstr00013932
WBCnstr00019586
WBCnstr00019593
WBCnstr00019594
WBCnstr00032298
AntibodyWBAntibody00001309
Microarray_results (30)
Expression_cluster (229)
InteractionWBInteraction000028967
WBInteraction000262189
WBInteraction000524192
WBInteraction000543558
WBInteraction000551356
WBInteraction000551357
WBInteraction000551359
WBInteraction000555696
WBInteraction000555697
WBInteraction000555698
Map_infoMapIPosition27.9483Error0.004097
PositivePositive_cloneF32A7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5192
Pseudo_map_position
Reference (15)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene