WormBase Tree Display for Gene: WBGene00009205

WBGene00009205 SMap: S_parent: Sequence: F28C6
  Identity: Version: 1
    Name: Sequence_name: F28C6.5
      Molecular_name: F28C6.5
        F28C6.5.1
        CE43362
      Other_name: CELE_F28C6.5 Accession_evidence: NDB BX284602
      Public_name: F28C6.5
    DB_info: Database: AceView gene 2I891
        WormQTL gene WBGene00009205
        WormFlux gene WBGene00009205
        NDB locus_tag CELE_F28C6.5
        NCBI gene 185048
        RefSeq protein NM_063420.7
        TREEFAM TREEFAM_ID TF353625
        TrEMBL UniProtAcc Q19865
        UniProt_GCRP UniProtAcc Q19865
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (13)
    RNASeq_FPKM (74)
    Ortholog (25)
    Structured_description: Automated_description: Enriched in several structures, including germline precursor cell; muscle cell; pharyngeal neurons; tail hypodermis; and touch receptor neurons based on tiling array; microarray; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and rrf-3 based on microarray and RNA-seq studies. Is affected by nine chemicals including Heme; glycine; and cholesterol based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28C6.5
    Corresponding_CDS_history: F28C6.5:wp197
    Corresponding_transcript: F28C6.5.1
    Other_sequence: NB06974
      Dviv_isotig27805
      CJC03363_1
      NBC03930_1
      NB06580
      Name_isotig02721
    Associated_feature: WBsf644484
      WBsf644485
  Experimental_info: RNAi_result: WBRNAi00063792 Inferred_automatically: RNAi_primary
      WBRNAi00014043 Inferred_automatically: RNAi_primary
      WBRNAi00063791 Inferred_automatically: RNAi_primary
      WBRNAi00063790 Inferred_automatically: RNAi_primary
      WBRNAi00045818 Inferred_automatically: RNAi_primary
      WBRNAi00031520 Inferred_automatically: RNAi_primary
      WBRNAi00063789 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011479
      Expr1034017
      Expr1149726
      Expr2003101
      Expr2021315
    Drives_construct: WBCnstr00032372
    Construct_product: WBCnstr00032372
    Microarray_results (19)
    Expression_cluster: WBPaper00036231:long-telomeres_downregulated
      WBPaper00036738:4uM_Heme_downregulated
      WBPaper00036738:500uM_Heme_downregulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:hypodermis_larva_SelectivelyEnriched
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00040420:ALM_PLM_enriched
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045521:Gender_Neutral
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L3
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056290:mdt-15(mg584)_upregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_downregulated_L1
      WBPaper00059739:hira-1(gk835598)_downregulated_L4
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060886:met-2(n4256)_upregulated
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:Hypodermis
      WBPaper00061340:Tail_hypodermis
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:lon-8-C18D11.1_11630
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061651:I4_enriched
      WBPaper00061651:M1_enriched
      WBPaper00061651:M3_enriched
      WBPaper00061651:M5_enriched
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062534:fat-P-80_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00065029:cadmium_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:129
      WBPaper00065841:4_2
      WBPaper00065841:56_0
      WBPaper00065841:58_1
      WBPaper00065841:59_0
      WBPaper00065841:67_0
      WBPaper00065841:68_0
      WBPaper00065841:68_1
      WBPaper00065841:95_0
      WBPaper00065841:96_0
      WBPaper00065841:104_0
      WBPaper00065841:124_0
      WBPaper00065841:125_0
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00005124:estrogen_10-5M_regulated
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031703:heme_responsive_6
      WBPaper00032948:FedUp
      WBPaper00032948:MoltOssilate
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_G
      WBPaper00037695:WC_5-day
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040116:pRJ-FR.5_down_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040876:mir-35_downregulated
      WBPaper00041207:CE_dauer_down
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042258:DA1877_downregulated_YoungAdult
      WBPaper00045673:colistin_upregulated
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_B
    Interaction: WBInteraction000295419
      WBInteraction000398063
      WBInteraction000418632
      WBInteraction000428549
  Map_info: Positive: Positive_clone: F28C6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 0.824124
  Method: Gene