WormBase Tree Display for Gene: WBGene00009188
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| WBGene00009188 | SMap | S_parent | Sequence | F27D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | lsy-22 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F27D4.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F27D4.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | lsy-22 | ||||||||
| DB_info | Database | AceView | gene | 1I282 | |||||
| WormQTL | gene | WBGene00009188 | |||||||
| WormFlux | gene | WBGene00009188 | |||||||
| NDB | locus_tag | CELE_F27D4.2 | |||||||
| NCBI | gene | 172536 | |||||||
| RefSeq | protein | NM_001392596.1 | |||||||
| NM_059746.6 | |||||||||
| TrEMBL | UniProtAcc | A7LPI4 | |||||||
| Q93616 | |||||||||
| UniProt_GCRP | UniProtAcc | Q93616 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Dec 2008 11:28:55 | WBPerson2970 | Event | Acquires_merge | WBGene00045425 | ||||
| 3 | 02 Mar 2018 10:40:21 | WBPerson4025 | Event | Split_into | WBGene00303056 | ||||
| Acquires_merge | WBGene00045425 | ||||||||
| Split_into | WBGene00303056 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsy | ||||||||
| Allele (157) | |||||||||
| Strain | WBStrain00029502 | ||||||||
| WBStrain00029503 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005165 | ||||||||
| 00005166 | |||||||||
| 00086300 | |||||||||
| 00086301 | |||||||||
| Ortholog (21) | |||||||||
| Structured_description | Automated_description | Enables DNA-binding transcription factor binding activity. Expressed in several structures, including body wall musculature and pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F27D4.2a | |||||||
| F27D4.2b | |||||||||
| Corresponding_CDS_history | F27D4.2:wp114 | ||||||||
| F27D4.2c:wp264 | |||||||||
| Corresponding_transcript | F27D4.2a.1 | ||||||||
| F27D4.2a.2 | |||||||||
| F27D4.2a.3 | |||||||||
| F27D4.2a.4 | |||||||||
| F27D4.2b.1 | |||||||||
| F27D4.2b.2 | |||||||||
| F27D4.2b.3 | |||||||||
| F27D4.2b.4 | |||||||||
| Other_sequence | Tcir_isotig23186 | ||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr4707 | ||||||||
| Expr4708 | |||||||||
| Expr9025 | |||||||||
| Expr1014114 | |||||||||
| Expr1034009 | |||||||||
| Expr1149646 | |||||||||
| Expr2013303 | |||||||||
| Expr2031534 | |||||||||
| Drives_construct | WBCnstr00006105 | ||||||||
| WBCnstr00006106 | |||||||||
| WBCnstr00006108 | |||||||||
| WBCnstr00006109 | |||||||||
| WBCnstr00012189 | |||||||||
| WBCnstr00012190 | |||||||||
| WBCnstr00032388 | |||||||||
| Construct_product | WBCnstr00006102 | ||||||||
| WBCnstr00006106 | |||||||||
| WBCnstr00006108 | |||||||||
| WBCnstr00006109 | |||||||||
| WBCnstr00032388 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | I | Position | 2.2998 | Error | 0.007055 | |||
| Positive | Positive_clone | F27D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029109 | ||||||||
| WBPaper00030973 | |||||||||
| WBPaper00034062 | |||||||||
| WBPaper00036201 | |||||||||
| WBPaper00036225 | |||||||||
| WBPaper00046304 | |||||||||
| WBPaper00057859 | |||||||||
| WBPaper00063208 | |||||||||
| WBPaper00066217 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
