WormBase Tree Display for Gene: WBGene00009170

WBGene00009170 SMap: S_parent: Sequence: F26F2
  Identity: Version: 1
    Name: Sequence_name: F26F2.5
      Molecular_name: F26F2.5
        F26F2.5.1
        CE19817
      Other_name: CELE_F26F2.5 Accession_evidence: NDB BX284605
      Public_name: F26F2.5
    DB_info: Database: AceView gene 5V41
        WormQTL gene WBGene00009170
        WormFlux gene WBGene00009170
        NDB locus_tag CELE_F26F2.5
        NCBI gene 184986
        RefSeq protein NM_075569.2
        TREEFAM TREEFAM_ID TF322777
        TrEMBL UniProtAcc Q9XV54
        UniProt_GCRP UniProtAcc Q9XV54
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (16)
    RNASeq_FPKM (74)
    Ortholog: chrV_pilon.g18121 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00009167 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00009169 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00219309 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00050959 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in ABplpppppp; ABprpppppp; and ventral nerve cord based on tiling array and single-cell RNA-seq studies. Is affected by several genes including skn-1; rrf-3; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including methylmercuric chloride; Mercuric Chloride; and sesamin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F26F2.5
    Corresponding_transcript: F26F2.5.1
  Experimental_info: RNAi_result: WBRNAi00013958 Inferred_automatically: RNAi_primary
      WBRNAi00045660 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1149576
      Expr2003031
      Expr2021245
    Drives_construct: WBCnstr00032402
    Construct_product: WBCnstr00032402
    Microarray_results (15)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032528:L3_depleted
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044316:CH3HgCl_2.0uM_upregulated
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00049484:elt-2(RNAi)_upregulated_L4
      WBPaper00049498:npr-1(ur89)_regulated_2
      WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
      WBPaper00049920:hyl-2(tm2031)_downregulated
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050843:sesamin_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated_microarray
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_embryo
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00059117:B.subtilis_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:C17H1.6-C17H1.13
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061636:atracurium_downregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064158:xpo-1(RNAi)_upregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065841:65_0
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:eri-1(mg366)_downregulated
      WBPaper00027111:rrf-1(pk1417)_downregulated
      WBPaper00028789:pmk-1_downregulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00036286:Pattern_F
      WBPaper00040876:mir-35_upregulated
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042574:N2_OrsayVirus_upregulated
      WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
      WBPaper00044535:male_upregulated
      WBPaper00045401:N.parisii_34h_upregulated_N2
      WBPaper00045673:colistin_downregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
    Interaction (11)
  Map_info: Positive: Positive_clone: F26F2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 25.0141
  Method: Gene