WormBase Tree Display for Gene: WBGene00009103
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| WBGene00009103 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rtfo-1 | Person_evidence | WBPerson634 | |||||
| Sequence_name | F25B3.6 | ||||||||
| Molecular_name | F25B3.6 | ||||||||
| F25B3.6.1 | |||||||||
| CE09619 | |||||||||
| Other_name | CELE_F25B3.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | rtfo-1 | ||||||||
| DB_info | Database | AceView | gene | 5K60 | |||||
| WormQTL | gene | WBGene00009103 | |||||||
| WormFlux | gene | WBGene00009103 | |||||||
| NDB | locus_tag | CELE_F25B3.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009103|UniProtKB=G5EBY0 | |||||||
| family | PTHR13115 | ||||||||
| NCBI | gene | 179345 | |||||||
| RefSeq | protein | NM_073072.5 | |||||||
| SwissProt | UniProtAcc | G5EBY0 | |||||||
| TREEFAM | TREEFAM_ID | TF321360 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBY0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Mar 2014 11:27:18 | WBPerson2970 | Name_change | CGC_name | rtfo-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rtfo | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00001726 | ||||||||
| WBStrain00001832 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00010501 | ||||||||
| 00010502 | |||||||||
| 00010503 | |||||||||
| 00010504 | |||||||||
| 00010505 | |||||||||
| 00010506 | |||||||||
| 00116870 | |||||||||
| Ortholog (28) | |||||||||
| Structured_description | Concise_description | rtfo-1 encodes the C. elegans ortholog of mammalian and Saccharomyces cerevisiae RTF1 that is a member of the PAF1 (Polymerase-Associated Factor 1) complex; by homology RTFO-1 is predicted to function in the regulation of transcription. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 23 Mar 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II C-terminal domain phosphoserine binding activity. Located in nucleus. Is an ortholog of human RTF1 (RTF1 homolog, Paf1/RNA polymerase II complex component). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25B3.6 | |||||||
| Corresponding_transcript | F25B3.6.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf652926 | ||||||||
| WBsf655581 | |||||||||
| WBsf669246 | |||||||||
| WBsf234246 | |||||||||
| WBsf234247 | |||||||||
| WBsf234248 | |||||||||
| WBsf234249 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Chronogram265 | ||||||||
| Chronogram1190 | |||||||||
| Expr5843 | |||||||||
| Expr9481 | |||||||||
| Expr11682 | |||||||||
| Expr1015533 | |||||||||
| Expr1033966 | |||||||||
| Expr1149383 | |||||||||
| Expr2015572 | |||||||||
| Expr2033807 | |||||||||
| Drives_construct | WBCnstr00002553 | ||||||||
| WBCnstr00004375 | |||||||||
| WBCnstr00019257 | |||||||||
| WBCnstr00032459 | |||||||||
| Construct_product | WBCnstr00014046 | ||||||||
| WBCnstr00019257 | |||||||||
| WBCnstr00032459 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (132) | |||||||||
| Interaction (87) | |||||||||
| Map_info | Map | V | Position | 2.05411 | |||||
| Positive | Positive_clone | F25B3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034662 | ||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045133 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063228 | |||||||||
| WBPaper00063960 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
