WormBase Tree Display for Gene: WBGene00009078
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| WBGene00009078 | SMap | S_parent | Sequence | F23B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rpb-12 | Person_evidence | WBPerson1787 | |||||
| Sequence_name | F23B2.13 | ||||||||
| Molecular_name | F23B2.13a | ||||||||
| F23B2.13a.1 | |||||||||
| CE20710 | |||||||||
| F23B2.13b | |||||||||
| CE49689 | |||||||||
| F23B2.13b.1 | |||||||||
| Other_name | rpc-10 | Person_evidence | WBPerson1787 | ||||||
| CELE_F23B2.13 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | rpb-12 | ||||||||
| DB_info | Database | AceView | gene | 4J910 | |||||
| WormQTL | gene | WBGene00009078 | |||||||
| WormFlux | gene | WBGene00009078 | |||||||
| NDB | locus_tag | CELE_F23B2.13 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009078|UniProtKB=Q9U3I0 | |||||||
| family | PTHR12056 | ||||||||
| NCBI | gene | 184886 | |||||||
| RefSeq | protein | NM_001392364.1 | |||||||
| NM_069192.2 | |||||||||
| TrEMBL | UniProtAcc | X5M5N4 | |||||||
| Q9U3I0 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U3I0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Oct 2007 14:18:28 | WBPerson2970 | Name_change | CGC_name | rpb-12 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpb | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00049346 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog | WBGene00040472 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00063906 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| SGD:S000001185 | Saccharomyces cerevisiae | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| FB:FBgn0262954 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| ZFIN:ZDB-GENE-070820-18 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| SonicParanoid | |||||||||
| HGNC:9198 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| MGI:102725 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| RGD:2319895 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and zinc ion binding activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I; transcription by RNA polymerase II; and transcription by RNA polymerase III. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Is an ortholog of human POLR2K (RNA polymerase II, I and III subunit K). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23B2.13a | |||||||
| F23B2.13b | |||||||||
| Corresponding_transcript | F23B2.13a.1 | ||||||||
| F23B2.13b.1 | |||||||||
| Other_sequence (303) | |||||||||
| Associated_feature | WBsf652039 | ||||||||
| WBsf997367 | |||||||||
| WBsf230514 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr1013932 | ||||||||
| Expr1033954 | |||||||||
| Expr1149312 | |||||||||
| Expr2015421 | |||||||||
| Expr2033656 | |||||||||
| Drives_construct | WBCnstr00032482 | ||||||||
| Construct_product | WBCnstr00032482 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (115) | |||||||||
| Interaction (159) | |||||||||
| Map_info | Map | IV | Position | 4.06918 | Error | 0.005755 | |||
| Positive | Positive_clone | F23B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029038 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059527 | |||||||||
| WBPaper00065275 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
