WormBase Tree Display for Gene: WBGene00008921

WBGene00008921 SMap: S_parent: Sequence: F17C11
  Identity: Version: 2
    Name: CGC_name: ctf-4 Person_evidence: WBPerson30546
      Sequence_name: F17C11.10
      Molecular_name: F17C11.10
        F17C11.10.1
        CE05657
      Other_name: CELE_F17C11.10 Accession_evidence: NDB BX284605
      Public_name: ctf-4
    DB_info: Database: AceView gene 5L442
        WormQTL gene WBGene00008921
        WormFlux gene WBGene00008921
        NDB locus_tag CELE_F17C11.10
        Panther gene CAEEL|WormBase=WBGene00008921|UniProtKB=Q19520
          family PTHR19932
        NCBI gene 179521
        RefSeq protein NM_073398.5
        TREEFAM TREEFAM_ID TF105988
        TrEMBL UniProtAcc Q19520
        UniProt_GCRP UniProtAcc Q19520
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 05 Apr 2017 11:17:23 WBPerson2970 Name_change: CGC_name: ctf-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ctf
    Allele (49)
    RNASeq_FPKM (74)
    GO_annotation: 00064969
      00064970
      00064971
      00064972
      00064973
      00064974
      00064975
      00064976
    Contained_in_operon: CEOP5268
    Ortholog: WBGene00041490 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00066253 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00157762 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00132245 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00099930 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00223683 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g965 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g812 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g482 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g892 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17921 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10555 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4688 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21470 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3487 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1589 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00253.g7932 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-F17C11.10 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold71.g441 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00065.g3089 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23890 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016539 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02046 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2488 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50305800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15655 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243610 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261105 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291120 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006339 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
      FB:FBgn0033890 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-1665 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:23170 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2443514 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1310200 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable chromatin binding activity. Predicted to be involved in DNA repair; DNA-templated DNA replication; and mitotic cell cycle. Predicted to be located in nuclear replication fork. Predicted to be part of replication fork protection complex. Human ortholog(s) of this gene implicated in cholangiocarcinoma. Is an ortholog of human WDHD1 (WD repeat and HMG-box DNA binding protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:4947 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:23170)
  Molecular_info: Corresponding_CDS: F17C11.10
    Corresponding_transcript: F17C11.10.1
    Other_sequence: CR00891
      CR04214
      CJC12789_1
      CJC13735_1
      CRC02477_1
      CRC12170_1
      CR00103
      CBC13226_1
    Associated_feature: WBsf653052
      WBsf234475
      WBsf234476
  Experimental_info: RNAi_result: WBRNAi00013456 Inferred_automatically: RNAi_primary
      WBRNAi00108113 Inferred_automatically: RNAi_primary
      WBRNAi00007584 Inferred_automatically: RNAi_primary
      WBRNAi00094296 Inferred_automatically: RNAi_primary
      WBRNAi00108114 Inferred_automatically: RNAi_primary
      WBRNAi00044871 Inferred_automatically: RNAi_primary
      WBRNAi00108126 Inferred_automatically: RNAi_primary
      WBRNAi00094214 Inferred_automatically: RNAi_primary
      WBRNAi00108115 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027543
      Expr1033883
      Expr1148835
      Expr2010570
      Expr2028810
    Drives_construct: WBCnstr00032593
    Construct_product: WBCnstr00032593
    Antibody: WBAntibody00002991
    Microarray_results (20)
    Expression_cluster (187)
    Interaction (129)
  Map_info: Positive: Positive_clone: F17C11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 2.85487
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00066002
  Method: Gene