WormBase Tree Display for Gene: WBGene00008595
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| WBGene00008595 | SMap | S_parent | Sequence | F08H9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-56 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F08H9.7 | ||||||||
| Molecular_name | F08H9.7 | ||||||||
| F08H9.7.1 | |||||||||
| CE37968 | |||||||||
| Other_name | CELE_F08H9.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | clec-56 | ||||||||
| DB_info | Database | AceView | gene | 5O955 | |||||
| WormQTL | gene | WBGene00008595 | |||||||
| WormFlux | gene | WBGene00008595 | |||||||
| NDB | locus_tag | CELE_F08H9.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008595|UniProtKB=Q19230 | |||||||
| family | PTHR47761 | ||||||||
| NCBI | gene | 179953 | |||||||
| RefSeq | protein | NM_074188.6 | |||||||
| TrEMBL | UniProtAcc | Q19230 | |||||||
| UniProt_GCRP | UniProtAcc | Q19230 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2005 13:53:46 | WBPerson2970 | Name_change | CGC_name | clec-56 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00047577 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (41) | |||||||||
| Paralog (51) | |||||||||
| Structured_description | Automated_description | Enriched in intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by twenty-three chemicals including Mercuric Chloride; rotenone; and manganese chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F08H9.7 | |||||||
| Corresponding_CDS_history | F08H9.7:wp138 | ||||||||
| Corresponding_transcript | F08H9.7.1 | ||||||||
| Associated_feature | WBsf647535 | ||||||||
| WBsf232930 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012939 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044065 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044064 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016007 | ||||||||
| Expr1033745 | |||||||||
| Expr1148031 | |||||||||
| Expr2010189 | |||||||||
| Expr2028431 | |||||||||
| Drives_construct | WBCnstr00032844 | ||||||||
| Construct_product | WBCnstr00032844 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (199) | |||||||||
| Interaction | WBInteraction000147502 | ||||||||
| WBInteraction000174194 | |||||||||
| WBInteraction000174195 | |||||||||
| WBInteraction000181610 | |||||||||
| WBInteraction000184852 | |||||||||
| WBInteraction000188055 | |||||||||
| WBInteraction000215057 | |||||||||
| WBInteraction000216219 | |||||||||
| WBInteraction000219354 | |||||||||
| WBInteraction000227243 | |||||||||
| WBInteraction000233943 | |||||||||
| WBInteraction000240326 | |||||||||
| WBInteraction000246167 | |||||||||
| WBInteraction000260794 | |||||||||
| WBInteraction000263862 | |||||||||
| WBInteraction000271048 | |||||||||
| WBInteraction000282042 | |||||||||
| WBInteraction000288002 | |||||||||
| WBInteraction000302878 | |||||||||
| WBInteraction000319974 | |||||||||
| WBInteraction000323797 | |||||||||
| WBInteraction000326521 | |||||||||
| WBInteraction000332645 | |||||||||
| WBInteraction000337013 | |||||||||
| WBInteraction000351725 | |||||||||
| WBInteraction000370075 | |||||||||
| WBInteraction000380324 | |||||||||
| WBInteraction000383691 | |||||||||
| WBInteraction000395038 | |||||||||
| WBInteraction000397195 | |||||||||
| WBInteraction000403535 | |||||||||
| WBInteraction000406842 | |||||||||
| WBInteraction000421150 | |||||||||
| WBInteraction000422053 | |||||||||
| WBInteraction000426892 | |||||||||
| WBInteraction000430664 | |||||||||
| WBInteraction000431835 | |||||||||
| WBInteraction000440568 | |||||||||
| WBInteraction000447863 | |||||||||
| WBInteraction000461031 | |||||||||
| Map_info | Map | V | Position | 6.41912 | Error | 0.000486 | |||
| Positive | Positive_clone | F08H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
