WormBase Tree Display for Gene: WBGene00008584
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| WBGene00008584 | SMap | S_parent | Sequence | F08G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irg-4 | Person_evidence | WBPerson9709 | |||||
| Sequence_name | F08G5.6 | ||||||||
| Molecular_name | F08G5.6 | ||||||||
| F08G5.6.1 | |||||||||
| CE05576 | |||||||||
| Other_name | CELE_F08G5.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | irg-4 | ||||||||
| DB_info | Database | AceView | gene | 4N201 | |||||
| WormQTL | gene | WBGene00008584 | |||||||
| WormFlux | gene | WBGene00008584 | |||||||
| NDB | locus_tag | CELE_F08G5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008584|UniProtKB=Q19223 | |||||||
| family | PTHR21447 | ||||||||
| NCBI | gene | 184206 | |||||||
| RefSeq | protein | NM_069973.7 | |||||||
| TREEFAM | TREEFAM_ID | TF315647 | |||||||
| TrEMBL | UniProtAcc | Q19223 | |||||||
| UniProt_GCRP | UniProtAcc | Q19223 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2016 15:57:39 | WBPerson2970 | Name_change | CGC_name | irg-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irg | ||||||||
| Allele (84) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063974 | ||||||||
| 00063975 | |||||||||
| 00063976 | |||||||||
| 00063977 | |||||||||
| 00063978 | |||||||||
| 00063979 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | F08G5.6 encodes a CUB-like domain-containing protein; F08G5.6 is involved in the transcriptional, innate immune response towards several different bacterial pathogens; an F08G5.6::gfp promoter fusion is expressed in the intestine and in head neurons; F08G5.6 expression is positively regulated in the intestine by the ELT-2 GATA transcription factor. | Paper_evidence | WBPaper00028482 | |||||
| WBPaper00029438 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Feb 2014 00:00:00 | ||||||||
| Automated_description | Involved in defense response to Gram-negative bacterium and innate immune response. Expressed in head neurons and intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F08G5.6 | |||||||
| Corresponding_transcript | F08G5.6.1 | ||||||||
| Associated_feature | WBsf034363 | ||||||||
| WBsf646476 | |||||||||
| WBsf229294 | |||||||||
| WBsf229295 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012932 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044057 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095405 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065094 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095422 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030673 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095216 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4725 | ||||||||
| Expr1018962 | |||||||||
| Expr1148022 | |||||||||
| Expr2012819 | |||||||||
| Expr2031058 | |||||||||
| Drives_construct | WBCnstr00012202 | ||||||||
| WBCnstr00019358 | |||||||||
| WBCnstr00032855 | |||||||||
| Construct_product | WBCnstr00012202 | ||||||||
| WBCnstr00015896 | |||||||||
| WBCnstr00032855 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (397) | |||||||||
| Interaction | WBInteraction000188239 | ||||||||
| WBInteraction000217872 | |||||||||
| WBInteraction000223593 | |||||||||
| WBInteraction000238430 | |||||||||
| WBInteraction000296383 | |||||||||
| WBInteraction000301112 | |||||||||
| WBInteraction000311618 | |||||||||
| WBInteraction000315782 | |||||||||
| WBInteraction000344265 | |||||||||
| WBInteraction000347635 | |||||||||
| WBInteraction000419909 | |||||||||
| WBInteraction000423536 | |||||||||
| WBInteraction000427537 | |||||||||
| WBInteraction000447802 | |||||||||
| WBInteraction000448807 | |||||||||
| WBInteraction000452272 | |||||||||
| WBInteraction000461659 | |||||||||
| WBInteraction000501645 | |||||||||
| WBInteraction000518639 | |||||||||
| WBInteraction000518795 | |||||||||
| WBInteraction000518796 | |||||||||
| WBInteraction000519023 | |||||||||
| WBInteraction000521957 | |||||||||
| WBInteraction000523948 | |||||||||
| WBInteraction000524300 | |||||||||
| WBInteraction000525355 | |||||||||
| WBInteraction000525358 | |||||||||
| WBInteraction000541262 | |||||||||
| WBInteraction000542656 | |||||||||
| WBInteraction000544786 | |||||||||
| WBInteraction000571174 | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| Map_info | Positive | Positive_clone | F08G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 5.92969 | |||||||
| Reference (16) | |||||||||
| Method | Gene |
