WormBase Tree Display for Gene: WBGene00008538

WBGene00008538 SMap: S_parent: Sequence: F02H6
  Identity: Version: 3
    Name: CGC_name: sqrd-1 Person_evidence: WBPerson6493
            WBPerson537
      Sequence_name: F02H6.5
      Molecular_name (18)
      Other_name: CELE_F02H6.5 Accession_evidence: NDB BX284604
      Public_name: sqrd-1
    DB_info: Database: AceView gene 4O987
        WormQTL gene WBGene00008538
        WormFlux gene WBGene00008538
        NDB locus_tag CELE_F02H6.5
        Panther gene CAEEL|WormBase=WBGene00008538|UniProtKB=O62133
          family PTHR10632
        NCBI gene 178374
        RefSeq protein NM_001307012.3
            NM_001268870.4
            NM_001307302.3
            NM_001268869.4
            NM_001268871.3
            NM_001307303.3
        TREEFAM TREEFAM_ID TF314384
        TrEMBL UniProtAcc A0A061ADY3
            O62133
            C6KRP5
            M1ZJU1
            C6KRP6
            M1ZJZ0
        UniProt_GCRP UniProtAcc O62133
    Species: Caenorhabditis elegans
    History: Version_change (3)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sqrd
    Allele (95)
    Strain: WBStrain00003179
      WBStrain00000225
      WBStrain00000227
      WBStrain00000229
      WBStrain00000218
      WBStrain00000221
      WBStrain00052078
    RNASeq_FPKM (74)
    GO_annotation: 00000274
      00000275
      00000276
      00000277
      00116428
    Contained_in_operon: CEOP4629
    Ortholog (31)
    Paralog: WBGene00021183 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00045102 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Automated_description: Predicted to enable FAD binding activity and sulfide:quinone oxidoreductase activity. Predicted to be involved in sulfide oxidation, using sulfide:quinone oxidoreductase. Predicted to be located in mitochondrion. Is an ortholog of human SQOR (sulfide quinone oxidoreductase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F02H6.5a
      F02H6.5b
      F02H6.5c
      F02H6.5d
      F02H6.5e
      F02H6.5f
    Corresponding_transcript: F02H6.5a.1
      F02H6.5b.1
      F02H6.5c.1
      F02H6.5d.1
      F02H6.5e.1
      F02H6.5f.1
    Other_sequence (51)
    Associated_feature: WBsf646558
      WBsf980910
      WBsf998531
      WBsf1018623
      WBsf229496
  Experimental_info: RNAi_result: WBRNAi00043837 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram2021
      Expr1023006
      Expr1033720
      Expr1147813
      Expr2016110
      Expr2034345
    Drives_construct: WBCnstr00003655
      WBCnstr00032888
    Construct_product: WBCnstr00032888
    Antibody: WBAntibody00002293
    Microarray_results (24)
    Expression_cluster (218)
    Interaction: WBInteraction000398121
      WBInteraction000400831
      WBInteraction000504997
      WBInteraction000519720
      WBInteraction000536841
      WBInteraction000536843
      WBInteraction000536844
      WBInteraction000539664
      WBInteraction000564292
      WBInteraction000568392
  Map_info: Map: IV Position: 11.5916 Error: 0.004319
    Positive: Positive_clone: F02H6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00039977
    WBPaper00042128
    WBPaper00048983
    WBPaper00055090
    WBPaper00059856
    WBPaper00066133
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene