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WormBase Tree Display for Gene: WBGene00008538

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Name Class

WBGene00008538SMapS_parentSequenceF02H6
IdentityVersion3
NameCGC_namesqrd-1Person_evidenceWBPerson6493
WBPerson537
Sequence_nameF02H6.5
Molecular_name (18)
Other_nameCELE_F02H6.5Accession_evidenceNDBBX284604
Public_namesqrd-1
DB_infoDatabaseAceViewgene4O987
WormQTLgeneWBGene00008538
WormFluxgeneWBGene00008538
NDBlocus_tagCELE_F02H6.5
PanthergeneCAEEL|WormBase=WBGene00008538|UniProtKB=O62133
familyPTHR10632
NCBIgene178374
RefSeqproteinNM_001307012.3
NM_001268870.4
NM_001307302.3
NM_001268869.4
NM_001268871.3
NM_001307303.3
TREEFAMTREEFAM_IDTF314384
TrEMBLUniProtAccA0A061ADY3
O62133
C6KRP5
M1ZJU1
C6KRP6
M1ZJZ0
UniProt_GCRPUniProtAccO62133
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
228 Apr 2008 17:14:20WBPerson2970Name_changeCGC_namesqr-1
318 Jul 2008 15:34:01WBPerson2970Name_changeCGC_namesqr-1 -> sqrd-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqrd
Allele (95)
StrainWBStrain00003179
WBStrain00000225
WBStrain00000227
WBStrain00000229
WBStrain00000218
WBStrain00000221
WBStrain00052078
RNASeq_FPKM (74)
GO_annotation00000274
00000275
00000276
00000277
00116428
Contained_in_operonCEOP4629
OrthologWBGene00038112Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WBGene00038111Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00161582Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00195101Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00071780Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00075521Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00105576Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00223418Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8741Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2073Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g7491Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3493Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25951Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17092Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10173Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23612Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cang_2012_03_13_00050.g2618Caenorhabditis angariaFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08582Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13984Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4459Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40275100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g12450Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00260377Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00263760Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00264731Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287804Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0035515Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050417-436Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:20390Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1929899Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1564504Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00021183Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00045102Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
Structured_descriptionAutomated_descriptionPredicted to enable FAD binding activity and sulfide:quinone oxidoreductase activity. Predicted to be involved in sulfide oxidation, using sulfide:quinone oxidoreductase. Predicted to be located in mitochondrion. Is an ortholog of human SQOR (sulfide quinone oxidoreductase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF02H6.5a
F02H6.5b
F02H6.5c
F02H6.5d
F02H6.5e
F02H6.5f
Corresponding_transcriptF02H6.5a.1
F02H6.5b.1
F02H6.5c.1
F02H6.5d.1
F02H6.5e.1
F02H6.5f.1
Other_sequence (51)
Associated_featureWBsf646558
WBsf980910
WBsf998531
WBsf1018623
WBsf229496
Experimental_infoRNAi_resultWBRNAi00043837Inferred_automaticallyRNAi_primary
Expr_patternChronogram2021
Expr1023006
Expr1033720
Expr1147813
Expr2016110
Expr2034345
Drives_constructWBCnstr00003655
WBCnstr00032888
Construct_productWBCnstr00032888
AntibodyWBAntibody00002293
Microarray_results (24)
Expression_cluster (218)
InteractionWBInteraction000398121
WBInteraction000400831
WBInteraction000504997
WBInteraction000519720
WBInteraction000536841
WBInteraction000536843
WBInteraction000536844
WBInteraction000539664
WBInteraction000564292
WBInteraction000568392
Map_infoMapIVPosition11.5916Error0.004319
PositivePositive_cloneF02H6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00039977
WBPaper00042128
WBPaper00048983
WBPaper00055090
WBPaper00059856
WBPaper00066133
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene