WormBase Tree Display for Gene: WBGene00008477
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| WBGene00008477 | SMap | S_parent | Sequence | E03H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-17 | Person_evidence | WBPerson655 | |||||
| Sequence_name | E03H4.10 | ||||||||
| Molecular_name | E03H4.10 | ||||||||
| E03H4.10.1 | |||||||||
| CE20647 | |||||||||
| Other_name | CELE_E03H4.10 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | clec-17 | ||||||||
| DB_info | Database | AceView | gene | 1N22 | |||||
| WormQTL | gene | WBGene00008477 | |||||||
| WormFlux | gene | WBGene00008477 | |||||||
| NDB | locus_tag | CELE_E03H4.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008477|UniProtKB=O17741 | |||||||
| family | PTHR22991 | ||||||||
| NCBI | gene | 173111 | |||||||
| RefSeq | protein | NM_060751.6 | |||||||
| TREEFAM | TREEFAM_ID | TF351663 | |||||||
| TrEMBL | UniProtAcc | O17741 | |||||||
| UniProt_GCRP | UniProtAcc | O17741 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2005 13:53:45 | WBPerson2970 | Name_change | CGC_name | clec-17 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele | WBVar01499739 | ||||||||
| WBVar01499204 | |||||||||
| WBVar01499055 | |||||||||
| WBVar00348164 | |||||||||
| WBVar00348165 | |||||||||
| WBVar00348166 | |||||||||
| WBVar00348167 | |||||||||
| WBVar00348168 | |||||||||
| WBVar00678911 | |||||||||
| WBVar00678912 | |||||||||
| WBVar00678913 | |||||||||
| WBVar00678914 | |||||||||
| WBVar00678915 | |||||||||
| WBVar00678916 | |||||||||
| WBVar00678917 | |||||||||
| WBVar00678918 | |||||||||
| WBVar00678919 | |||||||||
| WBVar00678920 | |||||||||
| WBVar00678921 | |||||||||
| WBVar00678922 | |||||||||
| WBVar00678923 | |||||||||
| WBVar00678924 | |||||||||
| WBVar01499999 | |||||||||
| WBVar00678925 | |||||||||
| WBVar00678926 | |||||||||
| WBVar00678927 | |||||||||
| WBVar00678928 | |||||||||
| WBVar00540865 | |||||||||
| WBVar01433805 | |||||||||
| WBVar01498959 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (50) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell; intestine; male-specific anatomical entity; mechanosensory neurons; and pharyngeal muscle cell based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirty-six chemicals including Heme; hydrogen sulfide; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | E03H4.10 | |||||||
| Corresponding_transcript | E03H4.10.1 | ||||||||
| Associated_feature | WBsf649663 | ||||||||
| WBsf665023 | |||||||||
| WBsf985560 | |||||||||
| WBsf220429 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043649 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078251 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003312 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030489 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016074 | ||||||||
| Expr1033688 | |||||||||
| Expr1147634 | |||||||||
| Expr2010098 | |||||||||
| Expr2028341 | |||||||||
| Drives_construct | WBCnstr00032940 | ||||||||
| Construct_product | WBCnstr00032940 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (311) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | I | Position | 13.1994 | Error | 0.001498 | |||
| Positive | Positive_clone | E03H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027722 | ||||||||
| WBPaper00031686 | |||||||||
| WBPaper00033987 | |||||||||
| WBPaper00037524 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039120 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059843 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
