WormBase Tree Display for Gene: WBGene00008393

WBGene00008393 SMap: S_parent: Sequence: D1086
  Identity: Version: 2
    Name: Sequence_name: D1086.6
      Molecular_name: D1086.6
        D1086.6.1
        CE43106
      Other_name: CELE_D1086.6 Accession_evidence: NDB BX284605
      Public_name: D1086.6
    DB_info: Database: AceView gene 5O561
        WormQTL gene WBGene00008393
        WormFlux gene WBGene00008393
        NDB locus_tag CELE_D1086.6
        NCBI gene 179904
        RefSeq protein NM_074091.9
        TREEFAM TREEFAM_ID TF351200
        TrEMBL UniProtAcc O17729
        UniProt_GCRP UniProtAcc O17729
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 11 Jan 2005 16:03:27 WBPerson1846 Event: Split_into: WBGene00044080
      Split_into: WBGene00044080
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (31)
    Strain: WBStrain00032800
    RNASeq_FPKM (74)
    Ortholog: chrV_pilon.g16424 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00008394 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008620 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044080 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044081 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in anterior spermatheca; cephalic sheath cell; dopaminergic neurons; hypodermis; and posterior spermatheca based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and rrf-3 based on RNA-seq and microarray studies. Is affected by sixteen chemicals including Ethanol; methylmercuric chloride; and rotenone based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: D1086.6
    Corresponding_CDS_history: D1086.6:wp48
      D1086.6:wp138
      D1086.6:wp195
    Corresponding_transcript: D1086.6.1
    Other_sequence: JI473971.1
      DI01537
      JI459561.1
    Associated_feature: WBsf232862
  Experimental_info: RNAi_result: WBRNAi00012554 Inferred_automatically: RNAi_primary
      WBRNAi00033600 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015665
      Expr1147417
      Expr2002058
      Expr2020282
    Drives_construct: WBCnstr00032999
    Construct_product: WBCnstr00032999
    Microarray_results (11)
    Expression_cluster: WBPaper00033444:BacteriaDiet_regulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_adult_enriched
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040209:B.thuringiensis_downregulated_MY18
      WBPaper00041954:ethanol_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044426:rotenone_5day_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:rising_dev_expression
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049266:trx-1(ok1449)_regulated_unstressed
      WBPaper00049498:npr-1(ur89)_regulated_8
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00050231:hermaphrodite_enriched
      WBPaper00050412:cco-1(RNAi)_downregulated_met-2(ok2307)
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053154:human-amyloid-beta_tau_regulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00054410:set-26(tm2467)_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Metformin_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055941:atfs-1(et15)_downregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_L4
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056290:mdt-15(mg584)_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056731:human-amylin_downregulated
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00058948:PA14_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060084:cco-1(RNAi)_downregulated_lin-40(yth27)
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00060909:atfs-1(et18)_upregulated
      WBPaper00060911:prx-5(RNAi)_downregulated_mRNA
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4747)_upregulated
      WBPaper00061651:Spermatheca_enriched
      WBPaper00061692:acivicin_upregulated
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062156:jmjd-5(zr1234)_upregulated_germline
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064156:lipl-4(overexpress)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064494:postdauer_downregulated_WholeAnimal
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064727:daf-2(e1370)_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065158:AFD_depleted
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00065623:36
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065841:11_2
      WBPaper00065841:43_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066004:ceh-14(ch3)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      cgc4489_group_2
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00051387:Triclosan_downregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc6390]:herm_soma-enriched
    Interaction (117)
  Map_info: Positive: Positive_clone: D1086 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.0906
  Method: Gene