WormBase Tree Display for Gene: WBGene00008352
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WBGene00008352 | SMap | S_parent | Sequence | cTel54X | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-6 | Person_evidence | WBPerson655 | |||
Sequence_name | cTel54X.1 | ||||||
Molecular_name | cTel54X.1 | ||||||
cTel54X.1.1 | |||||||
CE20619 | |||||||
Other_name | CELE_CTEL54X.1 | Accession_evidence | NDB | BX284603 | |||
Public_name | fbxa-6 | ||||||
DB_info | Database | AceView | gene | 3A620 | |||
WormQTL | gene | WBGene00008352 | |||||
WormFlux | gene | WBGene00008352 | |||||
NDB | locus_tag | CELE_CTEL54X.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00008352|UniProtKB=A4F303 | |||||
family | PTHR23015 | ||||||
NCBI | gene | 183881 | |||||
RefSeq | protein | NM_064723.2 | |||||
TREEFAM | TREEFAM_ID | TF322006 | |||||
TrEMBL | UniProtAcc | A4F303 | |||||
UniProt_GCRP | UniProtAcc | A4F303 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (76) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (46) | |||||||
Paralog (225) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in dopaminergic neurons; intestine; mechanosensory neurons; and rectal epithelium based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including levamisole; stavudine; and Rifampin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | cTel54X.1 | |||||
Corresponding_transcript | cTel54X.1.1 | ||||||
Associated_feature | WBsf226070 | ||||||
Experimental_info | RNAi_result | WBRNAi00068269 | Inferred_automatically | RNAi_primary | |||
WBRNAi00043312 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012484 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00068270 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030296 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1015384 | ||||||
Expr1163307 | |||||||
Expr2011570 | |||||||
Expr2029808 | |||||||
Microarray_results (17) | |||||||
Expression_cluster (176) | |||||||
Map_info | Map | III | Position | -27.2913 | |||
Positive | Positive_clone | cTel54X | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
WBPaper00041771 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |