WormBase Tree Display for Gene: WBGene00008352
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WBGene00008352 | SMap | S_parent | Sequence | cTel54X | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | fbxa | |||||
Allele (76) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (46) | ||||||
Paralog (225) | ||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | ||
Curator_confirmed | WBPerson567 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||
Automated_description | Enriched in dopaminergic neurons; intestine; mechanosensory neurons; and rectal epithelium based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including levamisole; stavudine; and Rifampin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | cTel54X.1 | ||||
Corresponding_transcript | cTel54X.1.1 | |||||
Associated_feature | WBsf226070 | |||||
Experimental_info | RNAi_result | WBRNAi00068269 | Inferred_automatically | RNAi_primary | ||
WBRNAi00043312 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00012484 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00068270 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00030296 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1015384 | |||||
Expr1163307 | ||||||
Expr2011570 | ||||||
Expr2029808 | ||||||
Microarray_results (17) | ||||||
Expression_cluster (176) | ||||||
Map_info | Map | III | Position | -27.2913 | ||
Positive | Positive_clone | cTel54X | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00012854 | |||||
WBPaper00041771 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |