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WormBase Tree Display for Gene: WBGene00008323

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Name Class

WBGene00008323SMapS_parentSequenceC55A1
IdentityVersion1
NameSequence_nameC55A1.6
Molecular_nameC55A1.6
C55A1.6.1
CE08992
Other_nameCELE_C55A1.6Accession_evidenceNDBBX284605
Public_nameC55A1.6
DB_infoDatabaseAceViewgene5Q121
WormQTLgeneWBGene00008323
WormFluxgeneWBGene00008323
NDBlocus_tagCELE_C55A1.6
PanthergeneCAEEL|WormBase=WBGene00008323|UniProtKB=O17712
familyPTHR33272
NCBIgene183827
RefSeqproteinNM_074492.2
TREEFAMTREEFAM_IDTF322318
TrEMBLUniProtAccO17712
UniProt_GCRPUniProtAccO17712
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (19)
RNASeq_FPKM (74)
Ortholog (22)
Paralog (21)
Structured_descriptionAutomated_descriptionEnriched in several structures, including GLR; MSpppaaa; coelomocyte; excretory system; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and let-7 based on microarray; proteomic; and RNA-seq studies. Is affected by thirteen chemicals including Mercuric Chloride; Sodium Chloride; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function (DUF4473) and Protein of unknown function DUF4473.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC55A1.6
Corresponding_transcriptC55A1.6.1
Associated_featureWBsf647603
WBsf233039
Experimental_infoRNAi_resultWBRNAi00030170Inferred_automaticallyRNAi_primary
WBRNAi00043203Inferred_automaticallyRNAi_primary
WBRNAi00012424Inferred_automaticallyRNAi_primary
Expr_patternExpr1020580
Expr1147183
Expr2001944
Expr2020167
Drives_constructWBCnstr00033055
Construct_productWBCnstr00033055
Microarray_results (19)
Expression_clusterWBPaper00025192:hda-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:coelomocytes_embryo_enriched
WBPaper00037950:coelomocytes_embryo_SelectivelyEnriched
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:excretory-cell_larva_enriched
WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00044316:HgCl2_20uM_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00050193:dpy-27(RNAi)_upregulated_L1
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053771:up_at_24h-NaCl
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055226:ADR-2_target_adr-1(tm668)
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00056826:hmc_biased
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00057158:mdt-15(tm2182)_dependent_15C_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058725:sftb-1(cer39)_upregulated
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L1
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060764:swsn-1(os22ts)_upregulated
WBPaper00060764:swsn-9(ok1354)_upregulated
WBPaper00061274:hypergravity_10xg_upregulated
WBPaper00061340:Coelomocyte
WBPaper00061340:GLR
WBPaper00061340:hmc
WBPaper00061340:hmc_and_homolog
WBPaper00061340:hmc_homolog
WBPaper00061527:T12G3.1_17-T12G3.1_18846
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061651:Coelomocyte_enriched
WBPaper00061651:Excretory_gland_cell_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062197:mec-8_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062335:sir-2.1(ok434)_upregulated_L3
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00065029:cadmium_upregulated
WBPaper00065043:dcap-1(tm3163)_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065158:AFD_depleted
WBPaper00065746:eat-2(ad1113)_upregulated
WBPaper00065841:5_0
WBPaper00065841:5_1
WBPaper00065841:11_3
WBPaper00065841:12_0
WBPaper00065841:37_0
WBPaper00065841:41_0
WBPaper00065841:41_1
WBPaper00065841:41_2
WBPaper00065841:89_0
WBPaper00065995:M.humicola-extract_upregulated_old-1(ok1273)
WBPaper00066110:Cisplatin_downregulated_diploid
WBPaper00066110:Doxorubicin_downregulated_diploid
cgc4386_cluster_6_6
cgc4489_group_17
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00027111:rde-3(ne298)_upregulated
WBPaper00029437:dcr-1_upregulated
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00031003:hlh_1_enriched
WBPaper00031832:slr-2_regulated
WBPaper00032948:FedUp
WBPaper00036286:Pattern_F
WBPaper00036383:ash-2_Day8_regulated
WBPaper00037695:WC_5-day
WBPaper00038172:tax-6null_up_regulated
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc6390]:male_soma-enriched
Interaction (27)
Map_infoPositivePositive_cloneC55A1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV8.54322
MethodGene