WormBase Tree Display for Gene: WBGene00008041
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| WBGene00008041 | SMap | S_parent | Sequence | C40H1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ufc-1 | Paper_evidence | WBPaper00042074 | |||||
| Sequence_name | C40H1.6 | ||||||||
| Molecular_name | C40H1.6 | ||||||||
| C40H1.6.1 | |||||||||
| CE00114 | |||||||||
| Other_name | CELE_C40H1.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ufc-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jun 2013 14:47:04 | WBPerson2970 | Name_change | CGC_name | ufc-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ufc | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00052388 | ||||||||
| 00052389 | |||||||||
| 00052390 | |||||||||
| 00052391 | |||||||||
| 00115999 | |||||||||
| 00116000 | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Enables ubiquitin conjugating enzyme binding activity. Predicted to be involved in protein ufmylation. Located in striated muscle dense body. Expressed in intestine and neurons. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with spasticity and poor growth. Is an ortholog of human UFC1 (ubiquitin-fold modifier conjugating enzyme 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070421 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26941) | ||||
| Molecular_info | Corresponding_CDS | C40H1.6 | |||||||
| Corresponding_transcript | C40H1.6.1 | ||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf645476 | ||||||||
| WBsf645477 | |||||||||
| WBsf225551 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00109724 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00109818 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109677 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042262 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006787 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029712 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109771 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr27 | ||||||||
| Expr9376 | |||||||||
| Expr10626 | |||||||||
| Expr1013690 | |||||||||
| Expr1033495 | |||||||||
| Expr1146253 | |||||||||
| Expr2017746 | |||||||||
| Expr2035885 | |||||||||
| Drives_construct | WBCnstr00017405 | ||||||||
| WBCnstr00033282 | |||||||||
| Construct_product | WBCnstr00013941 | ||||||||
| WBCnstr00033282 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (99) | |||||||||
| SAGE_tag | SAGE:gatggctgttgagattc | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gatggctgtt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttatggaagt | Strand | Antisense | |||||||
| SAGE:gtcaagtacgagtttga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gtcccaatccgagagcg | Strand | Antisense | |||||||
| SAGE:gtcaagtacg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | III | Position | 0.416172 | |||||
| Positive | Positive_clone | C40H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044965 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
