WormBase Tree Display for Gene: WBGene00007624
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| WBGene00007624 | SMap | S_parent | Sequence | C16C10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | hrde-1 | Paper_evidence | WBPaper00041312 | |||||
| Person_evidence | WBPerson315 | ||||||||
| WBPerson419 | |||||||||
| WBPerson1719 | |||||||||
| Sequence_name | C16C10.3 | ||||||||
| Molecular_name | C16C10.3 | ||||||||
| C16C10.3.1 | |||||||||
| CE01494 | |||||||||
| Other_name | wago-9 | Paper_evidence | WBPaper00035262 | ||||||
| Person_evidence | WBPerson419 | ||||||||
| CELE_C16C10.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | hrde-1 | ||||||||
| DB_info | Database | AceView | gene | 3F262 | |||||
| WormQTL | gene | WBGene00007624 | |||||||
| WormFlux | gene | WBGene00007624 | |||||||
| NDB | locus_tag | CELE_C16C10.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007624|UniProtKB=Q09249 | |||||||
| family | PTHR22891 | ||||||||
| NCBI | gene | 175535 | |||||||
| RefSeq | protein | NM_065433.8 | |||||||
| SwissProt | UniProtAcc | Q09249 | |||||||
| TREEFAM | TREEFAM_ID | TF318801 | |||||||
| UniProt_GCRP | UniProtAcc | Q09249 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 14 Oct 2011 15:24:19 | WBPerson2970 | Name_change | CGC_name | wago-9 | ||||
| 3 | 29 Aug 2012 16:31:45 | WBPerson2970 | Name_change | CGC_name | hrde-1 | ||||
| Other_name | wago-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hrde | ||||||||
| Allele (53) | |||||||||
| Possibly_affected_by | WBVar02158864 | ||||||||
| Strain | WBStrain00047720 | ||||||||
| WBStrain00051582 | |||||||||
| WBStrain00051580 | |||||||||
| WBStrain00051583 | |||||||||
| WBStrain00051579 | |||||||||
| WBStrain00052686 | |||||||||
| WBStrain00054834 | |||||||||
| In_cluster | conserved_RDE-1_cluster | ||||||||
| conserved_miRNA_siRNA_cluster | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053051 | ||||||||
| 00053052 | |||||||||
| 00053053 | |||||||||
| 00053054 | |||||||||
| 00053055 | |||||||||
| 00053056 | |||||||||
| 00115724 | |||||||||
| 00115725 | |||||||||
| Ortholog (40) | |||||||||
| Paralog (23) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA endonuclease activity and single-stranded RNA binding activity. Involved in germ cell development and regulatory ncRNA-mediated post-transcriptional gene silencing. Located in nucleus. Part of RNAi effector complex. Expressed in germ cell; germ line; and in male. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C16C10.3 | |||||||
| Corresponding_transcript | C16C10.3.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf650958 | ||||||||
| WBsf976075 | |||||||||
| WBsf976076 | |||||||||
| WBsf976077 | |||||||||
| WBsf976078 | |||||||||
| WBsf976079 | |||||||||
| WBsf976080 | |||||||||
| WBsf992053 | |||||||||
| WBsf226482 | |||||||||
| WBsf226483 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00005060 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085094 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098174 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027177 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040678 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028955 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007936 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10159 | ||||||||
| Expr10208 | |||||||||
| Expr14430 | |||||||||
| Expr16416 | |||||||||
| Expr1028210 | |||||||||
| Expr1033290 | |||||||||
| Expr1144725 | |||||||||
| Expr2012591 | |||||||||
| Expr2030827 | |||||||||
| Drives_construct | WBCnstr00015517 | ||||||||
| WBCnstr00033599 | |||||||||
| WBCnstr00038907 | |||||||||
| WBCnstr00038908 | |||||||||
| Construct_product | WBCnstr00015517 | ||||||||
| WBCnstr00033599 | |||||||||
| WBCnstr00038906 | |||||||||
| Regulate_expr_cluster (12) | |||||||||
| Antibody | WBAntibody00002349 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (213) | |||||||||
| Interaction (184) | |||||||||
| Map_info | Map | III | Position | -3.71417 | Error | 0.002716 | |||
| Positive | Positive_clone | C16C10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (70) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
