WormBase Tree Display for Gene: WBGene00007107
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| WBGene00007107 | SMap | S_parent | Sequence | B0035 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | pfd-4 | Person_evidence | WBPerson3663 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | B0035.4 | ||||||||
| Molecular_name | B0035.4 | ||||||||
| B0035.4.1 | |||||||||
| CE05162 | |||||||||
| Other_name | 4M79 | Accession_evidence | EMBL | AF292051 | |||||
| tag-317 | |||||||||
| CELE_B0035.4 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | pfd-4 | ||||||||
| DB_info | Database | AceView | gene | 4M81 | |||||
| WormQTL | gene | WBGene00007107 | |||||||
| WormFlux | gene | WBGene00007107 | |||||||
| NDB | locus_tag | CELE_B0035.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007107|UniProtKB=Q17435 | |||||||
| family | PTHR21100 | ||||||||
| NCBI | gene | 178045 | |||||||
| RefSeq | protein | NM_069727.7 | |||||||
| SwissProt | UniProtAcc | Q17435 | |||||||
| TREEFAM | TREEFAM_ID | TF106491 | |||||||
| UniProt_GCRP | UniProtAcc | Q17435 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag | ||||
| 3 | 02 Aug 2006 11:39:27 | WBPerson2970 | Name_change | CGC_name | pfd-4 | ||||
| Other_name | tag-317 | ||||||||
| 4 | 01 Mar 2018 16:12:55 | WBPerson4025 | Event | Split_into | WBGene00303031 | ||||
| Split_into | WBGene00303031 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pfd | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00036263 | ||||||||
| WBStrain00036318 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00058077 | ||||||||
| 00058078 | |||||||||
| 00058079 | |||||||||
| 00058080 | |||||||||
| 00115315 | |||||||||
| 00115316 | |||||||||
| 00115317 | |||||||||
| Contained_in_operon | CEOP4436 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | pfd-4 encodes a putative prefoldin subunit 4, orthologous to human PFDN4 (OMIM:604898), that is dispensable for viability; PFD-4 is redundant for prefoldin function in C. elegans; pfd-4(gk403) mutants and pfd-4(RNAi) animals, unlike animals undergoing RNAi against most prefoldin subunits, have no obvious phenotypes. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00024497 | |||||||||
| WBPaper00024925 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00027634 | |||||||||
| WBPaper00031309 | |||||||||
| WBPaper00031362 | |||||||||
| WBPaper00031363 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm. Predicted to be part of prefoldin complex. Is an ortholog of human PFDN4 (prefoldin subunit 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0035.4 | |||||||
| Corresponding_CDS_history | B0035.4a:wp264 | ||||||||
| B0035.4b:wp264 | |||||||||
| Corresponding_transcript | B0035.4.1 | ||||||||
| Other_sequence | CR12606 | ||||||||
| CBC00068_1 | |||||||||
| CRC12403_1 | |||||||||
| CJC15889_1 | |||||||||
| Associated_feature | WBsf646369 | ||||||||
| WBsf997806 | |||||||||
| WBsf997807 | |||||||||
| WBsf1018193 | |||||||||
| WBsf229139 | |||||||||
| WBsf229140 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00033624 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009567 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085052 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081826 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062083 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081793 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038679 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024922 | ||||||||
| Expr1033056 | |||||||||
| Expr1142885 | |||||||||
| Expr2014844 | |||||||||
| Expr2033079 | |||||||||
| Drives_construct | WBCnstr00033993 | ||||||||
| Construct_product | WBCnstr00033993 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (115) | |||||||||
| Interaction (80) | |||||||||
| Map_info | Map | IV | Position | 4.95351 | Error | 0.001297 | |||
| Positive | Positive_clone | B0035 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5219 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027634 | ||||||||
| WBPaper00031309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
