WormBase Tree Display for Gene: WBGene00006997
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WBGene00006997 | Evidence | Paper_evidence | WBPaper00006310 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y38A8 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | zyg-12 | Person_evidence | WBPerson698 | |||||
Sequence_name | ZK546.1 | ||||||||
Molecular_name (16) | |||||||||
Other_name | ber-1 | ||||||||
CELE_ZK546.1 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | zyg-12 | ||||||||
DB_info | Database | AceView | gene | 2F243 | |||||
WormQTL | gene | WBGene00006997 | |||||||
OMIM | disease | 610743 | |||||||
612998 | |||||||||
NDB | locus_tag | CELE_ZK546.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006997|UniProtKB=Q23529 | |||||||
family | PTHR18947 | ||||||||
NCBI | gene | 24105291 | |||||||
RefSeq | protein | NM_001373710.2 | |||||||
NM_001306592.3 | |||||||||
NM_001306591.3 | |||||||||
NM_001306590.3 | |||||||||
SwissProt | UniProtAcc | Q23529 | |||||||
TREEFAM | TREEFAM_ID | TF320231 | |||||||
UniProt_GCRP | UniProtAcc | Q23529 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info (12) | |||||||||
Disease_info | Experimental_model | DOID:11726 | Homo sapiens | Paper_evidence | WBPaper00040268 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 30 Apr 2013 00:00:00 | ||||||||
Disease_relevance | Studies in elegans have contributed much to the knowledge of SUN-KASH protein complexes which link components of the nucleus to the cytoplasm; KASH domain proteins in elegans which include zyg-12, anc-1, unc-83 and Y67H2A.5 are involved in nuclear positioning and migration; the family of mammalian KASH (klarsicht, ANC-1 and Syne) domain proteins include Nesprin-1/SYNE1, Nesprin-2/SYNE2, Nesprin-3/SYNE3 and Nesprin-4/SYNE4) that encode at least 12 isoforms, by alternative transcription and splicing; most KASH domain proteins do not share primary sequence homology outside of their KASH domain; mutations in SYNE1, similar to those in LMNA/Lamin, cause laminopathic diseases like Emery-Dreifuss muscular dystrophy (EDMD) and Spinocerebellar ataxia. | Homo sapiens | Paper_evidence | WBPaper00040268 | |||||
Accession_evidence | OMIM | 612998 | |||||||
610743 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 19 Mar 2012 00:00:00 | ||||||||
Modifies_disease | DOID:070355 | ||||||||
Models_disease_in_annotation | WBDOannot00000052 | ||||||||
Modifies_disease_in_annotation | WBDOannot00001301 | ||||||||
Molecular_info | Corresponding_CDS | ZK546.1a | |||||||
ZK546.1b | |||||||||
ZK546.1c | |||||||||
ZK546.1d | |||||||||
Corresponding_CDS_history | ZK546.1:wp86 | ||||||||
Corresponding_transcript | ZK546.1a.1 | ||||||||
ZK546.1a.2 | |||||||||
ZK546.1a.3 | |||||||||
ZK546.1b.1 | |||||||||
ZK546.1c.1 | |||||||||
ZK546.1d.1 | |||||||||
ZK546.1d.2 | |||||||||
ZK546.1d.3 | |||||||||
Other_sequence | CBC06237_1 | ||||||||
Associated_feature | WBsf987749 | ||||||||
WBsf987750 | |||||||||
WBsf987751 | |||||||||
WBsf221207 | |||||||||
WBsf221208 | |||||||||
Experimental_info | RNAi_result | WBRNAi00009474 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038328 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059501 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027075 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2828 | ||||||||
Expr2829 | |||||||||
Expr12819 | |||||||||
Expr1012697 | |||||||||
Expr1032993 | |||||||||
Expr1162915 | |||||||||
Expr2018210 | |||||||||
Expr2036348 | |||||||||
Drives_construct | WBCnstr00001382 | ||||||||
WBCnstr00010976 | |||||||||
Construct_product | WBCnstr00010976 | ||||||||
WBCnstr00016080 | |||||||||
WBCnstr00016084 | |||||||||
Antibody | WBAntibody00000705 | ||||||||
Microarray_results (36) | |||||||||
Expression_cluster (100) | |||||||||
Interaction (49) | |||||||||
Map_info | Map | II | Position | -2.65 | |||||
Positive | Positive_clone | ZK546 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | 2_point | 540 | |||||||
Multi_point | 477 | ||||||||
Reference (54) | |||||||||
Remark | [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-2.63542) | ||||||||
Method | Gene |