WormBase Tree Display for Gene: WBGene00006986
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| WBGene00006986 | SMap | S_parent | Sequence | Y75B8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | zip-1 | Person_evidence | WBPerson460 | |||||
| Sequence_name | Y75B8A.35 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y75B8A.35 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | zip-1 | ||||||||
| DB_info | Database | AceView | gene | 3N433 | |||||
| WormQTL | gene | WBGene00006986 | |||||||
| WormFlux | gene | WBGene00006986 | |||||||
| NDB | locus_tag | CELE_Y75B8A.35 | |||||||
| NCBI | gene | 176656 | |||||||
| RefSeq | protein | NM_001306678.3 | |||||||
| NM_001383010.2 | |||||||||
| NM_067201.7 | |||||||||
| TREEFAM | TREEFAM_ID | TF343482 | |||||||
| TrEMBL | UniProtAcc | Q9U1S5 | |||||||
| S6FWP2 | |||||||||
| G5EE45 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U1S5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zip | ||||||||
| Allele (377) | |||||||||
| Possibly_affected_by | WBVar02157852 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00015394 | ||||||||
| Ortholog (20) | |||||||||
| Paralog | WBGene00013562 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00018761 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | zip-1 encodes a protein with weak similarity to basic-leucine zipper-type transcription factors; ZIP-1 was identified in a screen for proteins able to bind a pharyngeal muscle-specific enhancer in the promoter of myo-2, which encodes a pharyngeal muscle-specific myosin; as loss of ZIP-1 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, ZIP-1 may function redundantly in pharyngeal muscle specification. | Paper_evidence | WBPaper00005395 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 26 Jan 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y75B8A.35a | |||||||
| Y75B8A.35b | |||||||||
| Y75B8A.35c | |||||||||
| Corresponding_transcript | Y75B8A.35a.1 | ||||||||
| Y75B8A.35a.2 | |||||||||
| Y75B8A.35b.1 | |||||||||
| Y75B8A.35b.2 | |||||||||
| Y75B8A.35b.3 | |||||||||
| Y75B8A.35c.1 | |||||||||
| Other_sequence | AF160492 | ||||||||
| FG581815.1 | |||||||||
| SR01239 | |||||||||
| Associated_feature | WBsf645658 | ||||||||
| WBsf994617 | |||||||||
| WBsf994618 | |||||||||
| WBsf994619 | |||||||||
| WBsf1016177 | |||||||||
| WBsf1016178 | |||||||||
| WBsf1016179 | |||||||||
| WBsf225898 | |||||||||
| WBsf225899 | |||||||||
| Transcription_factor | WBTranscriptionFactor000222 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00058469 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117229 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037851 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006899 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058463 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058468 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16097 | ||||||||
| Expr1023548 | |||||||||
| Expr1032987 | |||||||||
| Expr1161882 | |||||||||
| Expr2018155 | |||||||||
| Expr2036292 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | III | Position | 16.4405 | Error | 0.091442 | |||
| Positive | Positive_clone | Y75B8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| zip-1 | |||||||||
| Mapping_data | Multi_point | 4798 | |||||||
| 5018 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005395 | ||||||||
| WBPaper00023210 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00057437 | |||||||||
| WBPaper00060662 | |||||||||
| WBPaper00062345 | |||||||||
| WBPaper00062737 | |||||||||
| WBPaper00062920 | |||||||||
| WBPaper00064440 | |||||||||
| WBPaper00064532 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
