WormBase Tree Display for Gene: WBGene00006981
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| WBGene00006981 | SMap | S_parent | Sequence | C09C7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | zig-4 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C09C7.1 | ||||||||
| Molecular_name | C09C7.1 | ||||||||
| C09C7.1.1 | |||||||||
| CE02468 | |||||||||
| Other_name | CELE_C09C7.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | zig-4 | ||||||||
| DB_info | Database | AceView | gene | XI545 | |||||
| WormQTL | gene | WBGene00006981 | |||||||
| WormFlux | gene | WBGene00006981 | |||||||
| NDB | locus_tag | CELE_C09C7.1 | |||||||
| NCBI | gene | 181051 | |||||||
| RefSeq | protein | NM_076934.7 | |||||||
| SwissProt | UniProtAcc | G5ECB1 | |||||||
| TREEFAM | TREEFAM_ID | TF343606 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECB1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zig | ||||||||
| Allele (33) | |||||||||
| Strain | WBStrain00029296 | ||||||||
| WBStrain00001757 | |||||||||
| WBStrain00029286 | |||||||||
| WBStrain00035503 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00011422 | ||||||||
| 00011423 | |||||||||
| 00011424 | |||||||||
| 00011425 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | zig-4 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; ZIG-4 activity is required for maintenance of ventral nerve cord organization: the AVKL/R and PVQL/R axons of the left and right ventral nerve cords do not maintain their proper spatial positions and drift into the opposite cord; a zig-4::gfp reporter fusion is expressed in the PVT, ASK, BAG, and M2 neurons, with expression also seen during the L1 stage in pharyngeal mesoderm and ectoderm. | Paper_evidence | WBPaper00005064 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Involved in neuron development. Predicted to be located in extracellular region and plasma membrane. Expressed in neurons and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C09C7.1 | |||||||
| Corresponding_transcript | C09C7.1.1 | ||||||||
| Other_sequence | FD514513.1 | ||||||||
| CJC10066_1 | |||||||||
| CRC03657_1 | |||||||||
| JI166385.1 | |||||||||
| CR07197 | |||||||||
| Associated_feature | WBsf648337 | ||||||||
| WBsf1023331 | |||||||||
| WBsf235993 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000560 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010516 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028715 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040171 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram267 | ||||||||
| Expr1750 | |||||||||
| Expr3881 | |||||||||
| Expr5212 | |||||||||
| Expr1011484 | |||||||||
| Expr1032984 | |||||||||
| Expr1144247 | |||||||||
| Expr2018143 | |||||||||
| Expr2036280 | |||||||||
| Drives_construct (11) | |||||||||
| Construct_product | WBCnstr00006621 | ||||||||
| WBCnstr00006622 | |||||||||
| WBCnstr00006631 | |||||||||
| WBCnstr00006632 | |||||||||
| WBCnstr00034054 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (206) | |||||||||
| Interaction (15) | |||||||||
| Anatomy_function | WBbtf0027 | ||||||||
| Map_info | Map | X | Position | -0.996305 | Error | 0.016382 | |||
| Positive | Positive_clone | C09C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4178 | |||||||
| 4766 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (26) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
