WormBase Tree Display for Gene: WBGene00006977
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| WBGene00006977 | Evidence | Paper_evidence | WBPaper00006004 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| CGC_data_submission | |||||||||
| SMap | S_parent | Sequence | F59B2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | zif-1 | Person_evidence | WBPerson575 | |||||
| Sequence_name | F59B2.6 | ||||||||
| Molecular_name | F59B2.6 | ||||||||
| F59B2.6.1 | |||||||||
| CE34193 | |||||||||
| Other_name | tag-6 | CGC_data_submission | |||||||
| CELE_F59B2.6 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | zif-1 | ||||||||
| DB_info | Database | AceView | gene | 3K93 | |||||
| WormQTL | gene | WBGene00006977 | |||||||
| WormFlux | gene | WBGene00006977 | |||||||
| NDB | locus_tag | CELE_F59B2.6 | |||||||
| NCBI | gene | 176274 | |||||||
| RefSeq | protein | NM_066591.6 | |||||||
| SwissProt | UniProtAcc | P34482 | |||||||
| UniProt_GCRP | UniProtAcc | P34482 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zif | ||||||||
| Allele (40) | |||||||||
| Possibly_affected_by | WBVar02158846 | ||||||||
| Strain | WBStrain00035537 | ||||||||
| WBStrain00053456 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042634 | ||||||||
| 00042635 | |||||||||
| 00042636 | |||||||||
| 00042637 | |||||||||
| Ortholog (21) | |||||||||
| Structured_description | Concise_description | zif-1 encodes a SOCS-box protein that promotes establishment of the germ line by targetting germline proteins for cullin-dependent degradation in non-germline (somatic) cells; ZIF-1 binds germline CCCH-(zinc)-finger proteins and the E3 ubiquitin ligase subunit elongin C (ELC-1); while ZIF-1 has no obvious homologs, it may be analogous to the Drosophila SOCS-box protein GUSTAVUS, which is required for VASA localization to the germline and which does have mammalian homologs. | Paper_evidence | WBPaper00006004 | |||||
| WBPaper00013191 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in embryo development and ubiquitin-dependent protein catabolic process. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59B2.6 | |||||||
| Corresponding_CDS_history | F59B2.6:wp102 | ||||||||
| Corresponding_transcript | F59B2.6.1 | ||||||||
| Other_sequence | CJC03608_1 | ||||||||
| CRC00692_1 | |||||||||
| CR12585 | |||||||||
| CR02447 | |||||||||
| Associated_feature | WBsf225507 | ||||||||
| WBsf225508 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027573 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005611 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016080 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049149 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033184 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115909 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9122 | ||||||||
| Expr1023117 | |||||||||
| Expr1032982 | |||||||||
| Expr1152893 | |||||||||
| Expr2018136 | |||||||||
| Expr2036273 | |||||||||
| Drives_construct | WBCnstr00034058 | ||||||||
| Construct_product | WBCnstr00007494 | ||||||||
| WBCnstr00019859 | |||||||||
| WBCnstr00019861 | |||||||||
| WBCnstr00020930 | |||||||||
| WBCnstr00021634 | |||||||||
| WBCnstr00021636 | |||||||||
| WBCnstr00021638 | |||||||||
| WBCnstr00034058 | |||||||||
| WBCnstr00043075 | |||||||||
| WBCnstr00043076 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction (226) | |||||||||
| Map_info | Map | III | Position | 0.061132 | Error | 0.005066 | |||
| Positive | Positive_clone | F59B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4764 | |||||||
| 4187 | |||||||||
| 4799 | |||||||||
| 5517 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (28) | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information [krb 020721] | ||||||||
| Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
