WormBase Tree Display for Gene: WBGene00006967
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| WBGene00006967 | SMap | S_parent | Sequence | F55G1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | yrn-1 | |||||||
| Sequence_name | F55G1.16 | ||||||||
| Molecular_name | F55G1.16 | ||||||||
| Other_name | Y RNA | Paper_evidence | WBPaper00002296 | ||||||
| ceY RNA | Paper_evidence | WBPaper00002296 | |||||||
| CELE_F55G1.16 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | yrn-1 | ||||||||
| DB_info | Database | NDB | locus_tag | CELE_F55G1.16 | |||||
| NCBI | gene | 259757 | |||||||
| RefSeq | protein | NR_000284.2 | |||||||
| RNAcentral | URSid | URS00003C7EA6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001266 | |||||||
| Gene_class | yrn | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01499395 | |||||||||
| WBVar01499396 | |||||||||
| WBVar01499633 | |||||||||
| WBVar02151541 | |||||||||
| WBVar00251487 | |||||||||
| WBVar00921706 | |||||||||
| WBVar00921707 | |||||||||
| WBVar00921708 | |||||||||
| WBVar01500245 | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes 105 nucleotide RNA with structural similarity to vertebrate Y RNAs; associated with and bound by ROP-1; also bound by human Ro protein. [van Horn et al. 1995; CGC] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00106361 | ||||||||
| Structured_description | Concise_description | yrn-1 encodes an RNA with structural similarity to the vertebrate Y RNAs; yrn-1 is bound by the C. elegans Ro protein, ROP-1; it is also bound by the human Ro protein; the nematode ribonucleoprotein (RNP) complex is formed by the assembly of ROP-1 and yrn-1; RNA interference of yrn-1 does not produce any detectable phenotype, however CeY RNA levels are decreased in rop-1 mutants, indicating that Ro60 is required for Y RNA stability; the levels of CeY RNA are high in the embryo compared to other life stages. | Paper_evidence | WBPaper00002296 | |||||
| WBPaper00003364 | |||||||||
| WBPaper00003694 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 22 Sep 2005 00:00:00 | ||||||||
| Automated_description | Part of ribonucleoprotein complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F55G1.16 | |||||||
| Experimental_info | RNAi_result | WBRNAi00032896 | Inferred_automatically | RNAi_primary | |||||
| Expression_cluster | WBPaper00045380:cep-1(gk138)_downregulated_normal | ||||||||
| WBPaper00045380:cep-1(gk138)_downregulated_UV | |||||||||
| WBPaper00050743:elli-1(sam-3)_downregulated | |||||||||
| WBPaper00058725:sftb-1(cer6)_upregulated | |||||||||
| WBPaper00058725:sftb-1(cer39)_upregulated | |||||||||
| WBPaper00065975:P-body_vs_oocyte_depleted | |||||||||
| WBPaper00065975:P-body_vs_WholeAnimal_depleted | |||||||||
| Map_info | Map | IV | Position | 3.33967 | Error | 0.000229 | |||
| Positive | Positive_clone | F55G1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002296 | ||||||||
| WBPaper00003364 | |||||||||
| WBPaper00027581 | |||||||||
| WBPaper00061874 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
