WormBase Tree Display for Gene: WBGene00006966
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WBGene00006966 | SMap | S_parent | Sequence | F17A2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | xtr-2 | Person_evidence | WBPerson349 | |||||
Sequence_name | F17A2.1 | ||||||||
Molecular_name | F17A2.1a | ||||||||
F17A2.1a.1 | |||||||||
CE51271 | |||||||||
F17A2.1b | |||||||||
CE51547 | |||||||||
F17A2.1b.1 | |||||||||
Other_name | CELE_F17A2.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | xtr-2 | ||||||||
DB_info | Database | AceView | gene | XM933 | |||||
WormQTL | gene | WBGene00006966 | |||||||
WormFlux | gene | WBGene00006966 | |||||||
NDB | locus_tag | CELE_F17A2.1 | |||||||
Panther | gene | CAEEL|Gene_ORFName=CELE_F17A2.1|UniProtKB=A0A131MBZ9 | |||||||
family | PTHR39365 | ||||||||
NCBI | gene | 192058 | |||||||
RefSeq | protein | NM_001322636.1 | |||||||
NM_077658.4 | |||||||||
TrEMBL | UniProtAcc | A0A131MBZ9 | |||||||
A0A131MD22 | |||||||||
UniProt_GCRP | UniProtAcc | A0A131MBZ9 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | xtr | ||||||||
Allele (65) | |||||||||
Legacy_information | [Kuwabara PE] No mutants known. Sequence similarity to C-terminal regulatory region of TRA-2. Predicted gene F17A2.1 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00002132 | ||||||||
00002133 | |||||||||
00002134 | |||||||||
00115143 | |||||||||
00115144 | |||||||||
00115145 | |||||||||
Ortholog (24) | |||||||||
Paralog | WBGene00011687 | ||||||||
Structured_description | Concise_description | xtr-2 encodes a protein with similarity to TRA-2A and TRA-2B in a region known as the MX region, hypothesized to be a protein-protein interaction domain involved in negatively regulating tra-2 activity in the germ line. | Paper_evidence | WBPaper00003323 | |||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
Automated_description | Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F17A2.1a | |||||||
F17A2.1b | |||||||||
Corresponding_CDS_history | F17A2.1:wp252 | ||||||||
Corresponding_transcript | F17A2.1a.1 | ||||||||
F17A2.1b.1 | |||||||||
Associated_feature | WBsf663408 | ||||||||
WBsf1007274 | |||||||||
WBsf1007275 | |||||||||
WBsf1024031 | |||||||||
Experimental_info | RNAi_result | WBRNAi00044843 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013438 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1026932 | ||||||||
Expr1148807 | |||||||||
Expr2018113 | |||||||||
Drives_construct | WBCnstr00034064 | ||||||||
Construct_product | WBCnstr00034064 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (55) | |||||||||
Interaction (64) | |||||||||
Map_info | Map | X | Position | 7.02116 | |||||
Positive | Positive_clone | F17A2 | Author_evidence | Kuwabara PE | |||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003323 | ||||||||
WBPaper00048690 | |||||||||
Remark | Following advice from [Hodgkin J] the trx gene class was renamed to xtr. Hence xtr-2 is the new name for what was trx-2. [krb 020614] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |