WormBase Tree Display for Gene: WBGene00006966
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| WBGene00006966 | SMap | S_parent | Sequence | F17A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | xtr-2 | Person_evidence | WBPerson349 | |||||
| Sequence_name | F17A2.1 | ||||||||
| Molecular_name | F17A2.1a | ||||||||
| F17A2.1a.1 | |||||||||
| CE51271 | |||||||||
| F17A2.1b | |||||||||
| CE51547 | |||||||||
| F17A2.1b.1 | |||||||||
| Other_name | CELE_F17A2.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | xtr-2 | ||||||||
| DB_info | Database | AceView | gene | XM933 | |||||
| WormQTL | gene | WBGene00006966 | |||||||
| WormFlux | gene | WBGene00006966 | |||||||
| NDB | locus_tag | CELE_F17A2.1 | |||||||
| Panther | gene | CAEEL|Gene_ORFName=CELE_F17A2.1|UniProtKB=A0A131MBZ9 | |||||||
| family | PTHR39365 | ||||||||
| NCBI | gene | 192058 | |||||||
| RefSeq | protein | NM_001322636.1 | |||||||
| NM_077658.4 | |||||||||
| TrEMBL | UniProtAcc | A0A131MBZ9 | |||||||
| A0A131MD22 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A131MBZ9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | xtr | ||||||||
| Allele (65) | |||||||||
| Legacy_information | [Kuwabara PE] No mutants known. Sequence similarity to C-terminal regulatory region of TRA-2. Predicted gene F17A2.1 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002132 | ||||||||
| 00002133 | |||||||||
| 00002134 | |||||||||
| 00115143 | |||||||||
| 00115144 | |||||||||
| 00115145 | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00011687 | ||||||||
| Structured_description | Concise_description | xtr-2 encodes a protein with similarity to TRA-2A and TRA-2B in a region known as the MX region, hypothesized to be a protein-protein interaction domain involved in negatively regulating tra-2 activity in the germ line. | Paper_evidence | WBPaper00003323 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F17A2.1a | |||||||
| F17A2.1b | |||||||||
| Corresponding_CDS_history | F17A2.1:wp252 | ||||||||
| Corresponding_transcript | F17A2.1a.1 | ||||||||
| F17A2.1b.1 | |||||||||
| Associated_feature | WBsf663408 | ||||||||
| WBsf1007274 | |||||||||
| WBsf1007275 | |||||||||
| WBsf1024031 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044843 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013438 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026932 | ||||||||
| Expr1148807 | |||||||||
| Expr2018113 | |||||||||
| Drives_construct | WBCnstr00034064 | ||||||||
| Construct_product | WBCnstr00034064 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (55) | |||||||||
| Interaction | WBInteraction000136316 | ||||||||
| WBInteraction000138741 | |||||||||
| WBInteraction000139393 | |||||||||
| WBInteraction000141205 | |||||||||
| WBInteraction000142080 | |||||||||
| WBInteraction000148541 | |||||||||
| WBInteraction000165305 | |||||||||
| WBInteraction000167953 | |||||||||
| WBInteraction000169005 | |||||||||
| WBInteraction000171418 | |||||||||
| WBInteraction000185150 | |||||||||
| WBInteraction000187559 | |||||||||
| WBInteraction000187966 | |||||||||
| WBInteraction000193772 | |||||||||
| WBInteraction000196058 | |||||||||
| WBInteraction000201852 | |||||||||
| WBInteraction000202041 | |||||||||
| WBInteraction000205503 | |||||||||
| WBInteraction000208008 | |||||||||
| WBInteraction000210024 | |||||||||
| WBInteraction000211544 | |||||||||
| WBInteraction000212217 | |||||||||
| WBInteraction000216252 | |||||||||
| WBInteraction000221331 | |||||||||
| WBInteraction000225737 | |||||||||
| WBInteraction000248236 | |||||||||
| WBInteraction000249125 | |||||||||
| WBInteraction000249168 | |||||||||
| WBInteraction000250068 | |||||||||
| WBInteraction000267479 | |||||||||
| WBInteraction000268037 | |||||||||
| WBInteraction000269941 | |||||||||
| WBInteraction000272020 | |||||||||
| WBInteraction000275953 | |||||||||
| WBInteraction000279133 | |||||||||
| WBInteraction000293633 | |||||||||
| WBInteraction000301270 | |||||||||
| WBInteraction000302359 | |||||||||
| WBInteraction000307675 | |||||||||
| WBInteraction000313340 | |||||||||
| WBInteraction000324423 | |||||||||
| WBInteraction000328311 | |||||||||
| WBInteraction000328321 | |||||||||
| WBInteraction000334193 | |||||||||
| WBInteraction000334430 | |||||||||
| WBInteraction000343113 | |||||||||
| WBInteraction000349408 | |||||||||
| WBInteraction000356062 | |||||||||
| WBInteraction000361392 | |||||||||
| WBInteraction000362073 | |||||||||
| WBInteraction000364953 | |||||||||
| WBInteraction000374083 | |||||||||
| WBInteraction000376333 | |||||||||
| WBInteraction000378248 | |||||||||
| WBInteraction000380149 | |||||||||
| WBInteraction000382971 | |||||||||
| WBInteraction000391122 | |||||||||
| WBInteraction000401826 | |||||||||
| WBInteraction000415623 | |||||||||
| WBInteraction000416918 | |||||||||
| WBInteraction000423880 | |||||||||
| WBInteraction000446527 | |||||||||
| WBInteraction000452570 | |||||||||
| WBInteraction000461113 | |||||||||
| Map_info | Map | X | Position | 7.02116 | |||||
| Positive | Positive_clone | F17A2 | Author_evidence | Kuwabara PE | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003323 | ||||||||
| WBPaper00048690 | |||||||||
| Remark | Following advice from [Hodgkin J] the trx gene class was renamed to xtr. Hence xtr-2 is the new name for what was trx-2. [krb 020614] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
