WormBase Tree Display for Gene: WBGene00006965
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WBGene00006965 | SMap | S_parent | Sequence | F54F7 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | xtr-1 | Person_evidence | WBPerson349 | |||
Sequence_name | F54F7.4 | ||||||
Molecular_name | F54F7.4 | ||||||
F54F7.4.1 | |||||||
CE51247 | |||||||
Other_name | CELE_F54F7.4 | Accession_evidence | NDB | BX284606 | |||
Public_name | xtr-1 | ||||||
DB_info | Database | AceView | gene | XM471 | |||
WormQTL | gene | WBGene00006965 | |||||
WormFlux | gene | WBGene00006965 | |||||
NDB | locus_tag | CELE_F54F7.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006965|UniProtKB=Q20791 | |||||
family | PTHR39365 | ||||||
NCBI | gene | 192057 | |||||
RefSeq | protein | NM_001322634.2 | |||||
TrEMBL | UniProtAcc | Q20791 | |||||
UniProt_GCRP | UniProtAcc | Q20791 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Split_into | WBGene00269392 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | xtr | ||||||
Allele | WBVar01499887 | ||||||
WBVar01499888 | |||||||
WBVar01499710 | |||||||
WBVar02151253 | |||||||
WBVar00274545 | |||||||
WBVar02146398 | |||||||
WBVar00599183 | |||||||
WBVar00083340 | |||||||
WBVar00518334 | |||||||
WBVar00518335 | |||||||
WBVar00518336 | |||||||
WBVar01954546 | |||||||
WBVar01190767 | |||||||
WBVar01190768 | |||||||
WBVar01190769 | |||||||
WBVar01190770 | |||||||
WBVar01190771 | |||||||
WBVar01190772 | |||||||
WBVar01190773 | |||||||
WBVar01190774 | |||||||
WBVar01190775 | |||||||
WBVar01571039 | |||||||
WBVar01498960 | |||||||
WBVar01500067 | |||||||
WBVar01759529 | |||||||
Legacy_information | [Kuwabara PE] No mutants known. Sequence similarity to C-terminal regulatory region of TRA-2. Predicted gene F54F7.4 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00069145 | ||||||
00069146 | |||||||
00069147 | |||||||
00115140 | |||||||
00115141 | |||||||
00115142 | |||||||
Ortholog (13) | |||||||
Paralog | WBGene00006605 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00044213 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Concise_description | xtr-1 encodes a protein with similarity to TRA-2A and TRA-2B in a region known as the MX region, hypothesized to be a protein-protein interaction domain involved in negatively regulating tra-2 activity in the germ line. | Paper_evidence | WBPaper00003323 | |||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 31 Mar 2005 00:00:00 | ||||||
Automated_description | Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F54F7.4 | |||||
Corresponding_CDS_history | F54F7.4:wp252 | ||||||
Corresponding_transcript | F54F7.4.1 | ||||||
Other_sequence | CRC10370_1 | ||||||
CR05644 | |||||||
Experimental_info | RNAi_result | WBRNAi00048381 | Inferred_automatically | RNAi_primary | |||
WBRNAi00015661 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1028828 | ||||||
Expr1152171 | |||||||
Expr2018112 | |||||||
Expr2036250 | |||||||
Drives_construct | WBCnstr00034065 | ||||||
Construct_product | WBCnstr00034065 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (145) | |||||||
Map_info | Map | X | Position | 6.73782 | |||
Positive | Positive_clone | F54F7 | Author_evidence | Kuwabara PE | |||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | |||||||
Reference | WBPaper00003323 | ||||||
Remark | Following advice from [Hodgkin J], the trx gene class was renamed to xtr. Hence this gene used to be called trx-1. [krb 020614] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |