WormBase Tree Display for Gene: WBGene00006822
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| WBGene00006822 | SMap | S_parent | Sequence | C46F11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | unc-93 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C46F11.1 | ||||||||
| Molecular_name | C46F11.1a | ||||||||
| C46F11.1a.1 | |||||||||
| CE30906 | |||||||||
| C46F11.1b | |||||||||
| CE37957 | |||||||||
| C46F11.1b.1 | |||||||||
| Other_name | CELE_C46F11.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | unc-93 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00006822 | |||||
| WormFlux | gene | WBGene00006822 | |||||||
| NDB | locus_tag | CELE_C46F11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006822|UniProtKB=Q93380 | |||||||
| family | PTHR19444 | ||||||||
| NCBI | gene | 175466 | |||||||
| RefSeq | protein | NM_001026047.5 | |||||||
| NM_001381807.1 | |||||||||
| SwissProt | UniProtAcc | Q93380 | |||||||
| TREEFAM | TREEFAM_ID | TF314905 | |||||||
| UniProt_GCRP | UniProtAcc | Q93380 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | unc | ||||||||
| Reference_allele | WBVar00144047 | ||||||||
| Allele (189) | |||||||||
| Legacy_information | Class 3 allele e1500sd : adults paralysed Egl; slightly long; abnormal muscle; contract and relax when prodded (`rubber-band' phenotype). ES3 ME0. Poor mating in e1500/+ males. NA (Class 3) 2 (n200 : resembles e1500 but less severe phenotype). Class 1 (loss-of-function) alleles n392 : no phenotype alone but fails to complement e1500. Intragenic revertants of e1500 all have Class 1 phenotype probably null alleles e.g. e1500n234amber. NA (Class 1) > 30. See also sup-9 sup-10 sup-11 sup-18. | ||||||||
| See also n192, n200, n201, n202, n203, n204, n205, n206, n207, n208, n209, n210, n211, n212, n214, n215, n216, n217, n218, n220, n224, n225, n226, n230, n231, n232, n234, n235, n236, n239, n243, n244, n246, n248, n254, n255, n256, n257, n259, n267, n268, n270, n291, n340, n341, n343, n344, n348, n349, n351, n352, n354, n392, n393, n394, n395, n396, n509, n511, n512, n516, n517, n520, n523, n618, n620, n623, n624, n626, n627, n629, n657, n660, n663, n665, n666, n667, n978, n979, n980, n981, n982, n1011, n1018, n1019, n1021, n1024, n1027 | |||||||||
| [Reiner D]] Mac-d (Muscle ACtivation-Defective) | |||||||||
| [C.elegansII] e1500sd : adults paralysed, Egl; slightly long;abnormal muscle; contract and relax when prodded (`rubber-band' phenotype). Muscle activation defective (flaccid, long).ES3 ME0. Poor mating in e1500/+ males. Neomorphic allele, gf. OA1 (gf): n200(resembles e1500 but less severe phenotype).Both gf alleles suppressed by sup-9, sup-10,sup-11, sup-18. Also lf alleles: n392 (no phenotype alone but fails to complement e1500), n393 etc. Intragenic revertants of e1500 all have similar WT lf phenotype: e1500n234amb, des, e1500n200spo, e1500n243gri, e1500n1415::Tc1, etc. OA>30 (ird). Cloned: 2.2 kb transcripts (slightly different 5'), encoding 700 and 705 aa predicted novel proteins with multiple (5-10) possible TM domains. [Greenwald and Horvitz 1980; Levin and Horvitz 1992;MT] | |||||||||
| Strain (31) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (39) | |||||||||
| Structured_description (2) | |||||||||
| Molecular_info | Corresponding_CDS | C46F11.1a | |||||||
| C46F11.1b | |||||||||
| Corresponding_CDS_history | C46F11.1:wp80 | ||||||||
| C46F11.1:wp138 | |||||||||
| C46F11.1:wp140 | |||||||||
| Corresponding_transcript | C46F11.1a.1 | ||||||||
| C46F11.1b.1 | |||||||||
| Other_sequence | FE914682.1 | ||||||||
| FE913923.1 | |||||||||
| Dviv_isotig29800 | |||||||||
| ASC31488_1 | |||||||||
| JI167429.1 | |||||||||
| Associated_feature | WBsf991851 | ||||||||
| WBsf991852 | |||||||||
| WBsf991853 | |||||||||
| WBsf991854 | |||||||||
| WBsf224634 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr2773 | ||||||||
| Expr2775 | |||||||||
| Expr1019911 | |||||||||
| Expr1032886 | |||||||||
| Expr1146588 | |||||||||
| Expr2017919 | |||||||||
| Expr2036055 | |||||||||
| Drives_construct (19) | |||||||||
| Construct_product (23) | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (85) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Map | III | Position | -5.0882 | Error | 0.020586 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | nDf6 | |||||||
| nDf7 | |||||||||
| nDf8 | |||||||||
| nDf10 | |||||||||
| nDf11 | |||||||||
| nDf12 | |||||||||
| nDf13 | |||||||||
| nDf14 | |||||||||
| nDf15 | |||||||||
| Positive_clone | C46F11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| MT#JL932 | |||||||||
| Mapping_data | 2_point | 402 | |||||||
| 403 | |||||||||
| 6037 | |||||||||
| 6039 | |||||||||
| 6040 | |||||||||
| Multi_point (46) | |||||||||
| Pos_neg_data (11) | |||||||||
| Landmark_gene | |||||||||
| Reference (114) | |||||||||
| Method | Gene |
