WormBase Tree Display for Gene: WBGene00006803
expand all nodes | collapse all nodes | view schema
WBGene00006803 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | K11C4 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | unc-70 | Person_evidence | WBPerson261 | |||||
Sequence_name | K11C4.3 | ||||||||
Molecular_name (12) | |||||||||
Other_name | bgs-1 | ||||||||
CELE_K11C4.3 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | unc-70 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | unc | ||||||||
Reference_allele | WBVar00143275 | ||||||||
Allele (168) | |||||||||
Possibly_affected_by | WBVar02152909 | ||||||||
Legacy_information | e524ts sd : irregular loopy movement sometimes coiling active grows well. ES2 ME2. NA2 (n493sd : curly uncoordinated non-ts). Revertants e.g. n493n1170ird have recessive lethal phenotype (probable null phenotype). NA (ird) 8. | ||||||||
See also n493, n1170, n1171, n1172, n1173, n1174, n1175, n1176, s115, s1406, s1502, s1532, s1557, s1639 | |||||||||
[C.elegansII] e524ts,sd : irregular loopy movement, sometimes coiling, active; grows well.e524/+ weak coiler at 25C. ES2 ME2. OA1 (sd): n493sd (curly, uncoordinated, non-ts). Revertants e.g. n493n1170ird have recessive lethal phenotype, early L1 arrest (probable null phenotype). OA7 (ird) 8. Also lethal alleles, OA>5: s115, s1406,s1639 etc. (all early/mid larval lethals, dominant weak Unc). Dominance of many alleles strongly enhanced by smg background. [Park and Horvitz 1986; Johnsen and Baillie 1991; TR] | |||||||||
Strain (13) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (32) | |||||||||
Ortholog (38) | |||||||||
Paralog (13) | |||||||||
Structured_description | Concise_description | unc-70 encodes two isoforms of a beta-spectrin ortholog required for normal body curvature and shape, normal movement, and correct localization of the alpha-spectrin SPC-1; the predominant UNC-70 isoform is expressed in all embryonic cells except the intestine, at the plasma membrane at sites of intercellular contact; UNC-70 becomes largely restricted to muscles and neurons from hatching to adulthood, with expression in adult spermetheca and hypodermis as well; conversely, the minor isoform is predominantly expressed in gut, and is also apposed to intercellular membrane junctions in embryos; sma-1 mutations (which impair the one beta-H-spectrin ortholog in C. elegans) enhance the unc-70 phenotype; UNC-70 is dispensable for viability (under undemanding laboratory culture conditions). | Paper_evidence | WBPaper00000914 | |||||
WBPaper00004127 | |||||||||
WBPaper00004128 | |||||||||
WBPaper00004346 | |||||||||
WBPaper00005321 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable actin filament binding activity. Involved in several processes, including dendrite development; embryonic body morphogenesis; and muscle cell cellular homeostasis. Located in cell junction; contractile fiber; and lateral plasma membrane. Expressed in hermaphrodite gonad and vulval cell. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 14; hereditary spherocytosis type 2; and spinocerebellar ataxia type 5. Is an ortholog of human SPTB (spectrin beta, erythrocytic). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0050882 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11276) | ||||
DOID:0110917 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11274) | ||||||
DOID:0080058 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11276) | ||||||
DOID:12971 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11274) | ||||||
Molecular_info | Corresponding_CDS | K11C4.3a | |||||||
K11C4.3b | |||||||||
K11C4.3c | |||||||||
K11C4.3d | |||||||||
Corresponding_transcript | K11C4.3a.1 | ||||||||
K11C4.3b.1 | |||||||||
K11C4.3c.1 | |||||||||
K11C4.3d.1 | |||||||||
Other_sequence (39) | |||||||||
Associated_feature (16) | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00004088 | ||||||||
WBCnstr00020314 | |||||||||
WBCnstr00020358 | |||||||||
WBCnstr00034142 | |||||||||
WBCnstr00040198 | |||||||||
Construct_product | WBCnstr00001638 | ||||||||
WBCnstr00001641 | |||||||||
WBCnstr00001642 | |||||||||
WBCnstr00020314 | |||||||||
WBCnstr00020358 | |||||||||
WBCnstr00022518 | |||||||||
WBCnstr00034142 | |||||||||
WBCnstr00040198 | |||||||||
Regulate_expr_cluster | WBPaper00057041:unc-70(cas983)_downregulated | ||||||||
WBPaper00057041:unc-70(cas983)_upregulated | |||||||||
Antibody | WBAntibody00000281 | ||||||||
Microarray_results (29) | |||||||||
Expression_cluster (200) | |||||||||
Interaction | WBInteraction000001747 | ||||||||
WBInteraction000009579 | |||||||||
WBInteraction000037196 | |||||||||
WBInteraction000042060 | |||||||||
WBInteraction000042591 | |||||||||
WBInteraction000046699 | |||||||||
WBInteraction000049358 | |||||||||
WBInteraction000052698 | |||||||||
WBInteraction000122962 | |||||||||
WBInteraction000122966 | |||||||||
WBInteraction000122967 | |||||||||
WBInteraction000122968 | |||||||||
WBInteraction000122969 | |||||||||
WBInteraction000123850 | |||||||||
WBInteraction000136436 | |||||||||
WBInteraction000158882 | |||||||||
WBInteraction000158966 | |||||||||
WBInteraction000162563 | |||||||||
WBInteraction000164241 | |||||||||
WBInteraction000164242 | |||||||||
WBInteraction000164452 | |||||||||
WBInteraction000166416 | |||||||||
WBInteraction000172972 | |||||||||
WBInteraction000174011 | |||||||||
WBInteraction000174012 | |||||||||
WBInteraction000174013 | |||||||||
WBInteraction000174014 | |||||||||
WBInteraction000189205 | |||||||||
WBInteraction000305265 | |||||||||
WBInteraction000307002 | |||||||||
WBInteraction000311624 | |||||||||
WBInteraction000339152 | |||||||||
WBInteraction000339363 | |||||||||
WBInteraction000365107 | |||||||||
WBInteraction000390636 | |||||||||
WBInteraction000393338 | |||||||||
WBInteraction000393780 | |||||||||
WBInteraction000432853 | |||||||||
WBInteraction000442313 | |||||||||
WBInteraction000520352 | |||||||||
WBInteraction000520360 | |||||||||
WBInteraction000551436 | |||||||||
WBInteraction000552929 | |||||||||
WBInteraction000554199 | |||||||||
WBInteraction000559388 | |||||||||
WBInteraction000563457 | |||||||||
WBInteraction000564384 | |||||||||
WBInteraction000567105 | |||||||||
WBInteraction000569205 | |||||||||
WBInteraction000571943 | |||||||||
WBInteraction000572672 | |||||||||
WBInteraction000572774 | |||||||||
WBInteraction000574164 | |||||||||
WBInteraction000576362 | |||||||||
WBInteraction000579484 | |||||||||
WBInteraction000583154 | |||||||||
WBInteraction000586505 | |||||||||
WBProcess | WBbiopr:00000006 | ||||||||
Map_info | Map | V | Position | 0.418538 | Error | 0.021789 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | nDf32 | |||||||
nDf33 | |||||||||
Positive_clone | K11C4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | 2_point | 304 | |||||||
2873 | |||||||||
Multi_point | 653 | ||||||||
657 | |||||||||
1147 | |||||||||
3427 | |||||||||
3863 | |||||||||
3866 | |||||||||
3867 | |||||||||
4376 | |||||||||
4556 | |||||||||
Pos_neg_data | 1744 | ||||||||
1774 | |||||||||
3056 | |||||||||
3083 | |||||||||
2874 | |||||||||
2875 | |||||||||
3055 | |||||||||
3067 | |||||||||
860 | |||||||||
Reference (73) | |||||||||
Remark | Sequence connection from [Hammerlund M] | ||||||||
Method | Gene |