WormBase Tree Display for Gene: WBGene00006802
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| WBGene00006802 | SMap | S_parent | Sequence | T07A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | unc-69 | Paper_evidence | WBPaper00027646 | |||||
| Person_evidence | WBPerson261 | ||||||||
| Sequence_name | T07A5.6 | ||||||||
| Molecular_name | T07A5.6a | ||||||||
| T07A5.6a.1 | |||||||||
| CE23955 | |||||||||
| T07A5.6b | |||||||||
| CE38102 | |||||||||
| T07A5.6c | |||||||||
| CE41450 | |||||||||
| T07A5.6b.1 | |||||||||
| T07A5.6c.1 | |||||||||
| Other_name | CELE_T07A5.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | unc-69 | ||||||||
| DB_info | Database | AceView | gene | 3L409 | |||||
| WormFlux | gene | WBGene00006802 | |||||||
| NDB | locus_tag | CELE_T07A5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006802|UniProtKB=A7LPF8 | |||||||
| family | PTHR21614 | ||||||||
| NCBI | gene | 176444 | |||||||
| RefSeq | protein | NM_001027582.4 | |||||||
| NM_001027581.5 | |||||||||
| NM_001129245.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF323340 | |||||||
| TrEMBL | UniProtAcc | A7LPF8 | |||||||
| Q9U377 | |||||||||
| G5EDQ5 | |||||||||
| UniProt_GCRP | UniProtAcc | A7LPF8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 30 Oct 2007 10:02:14 | WBPerson2970 | Event | Acquires_merge | WBGene00044098 | ||||
| Name_change | Sequence_name | T07A5.6 | |||||||
| Acquires_merge | WBGene00044098 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | unc | ||||||||
| Reference_allele | WBVar00143321 | ||||||||
| Allele (18) | |||||||||
| Legacy_information | e587 : medium coiler inactive small; abnormalities in VD and DD commissures. ES3 ME0. NA2 (e602). | ||||||||
| [C.elegansII] e587 : medium coiler, inactive, small; abnormalities in VD and DD commissures, longitudinal axon elongation. ES3 ME0. OA1: e602. Cloned: cosmid rescue (C46D2). [Brenner 1974; NG; SQ; WS] | |||||||||
| Strain (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005135 | ||||||||
| 00005136 | |||||||||
| 00005137 | |||||||||
| 00005138 | |||||||||
| 00005139 | |||||||||
| 00005140 | |||||||||
| 00005141 | |||||||||
| 00005142 | |||||||||
| 00005143 | |||||||||
| Ortholog | WBGene00042681 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00055730 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00161369 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00109470 | Pristionchus pacificus | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00120626 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00217114 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00225889 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| CBOVI.g4327 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g7270 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g14955 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g9527 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g15240 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g2661 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g15889 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g3087 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g22519 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g476 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00280.g8411 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-unc-69 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold628.g7395 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00332.g9569 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_13494 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_010498 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g08111 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Pan_g22478 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
| Sp34_30119300 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIII_pilon.g8843 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00245979 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| WBGene00258941 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00293073 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
| FB:FBgn0039505 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| ZFIN:ZDB-GENE-061013-114 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| ZFIN:ZDB-GENE-041010-41 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| HGNC:20335 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| SonicParanoid | |||||||||
| MGI:1927654 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| RGD:1311860 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| SonicParanoid | |||||||||
| Structured_description | Concise_description | unc-69 encodes, by alternative splicing, three isoforms of a small (102- to 176-residue) coiled-coil protein required for normal axonal extension, axonal guidance, neuronal fasciculation, and synaptic vesicle localization; UNC-69 is orthologous to human SCOCO, which can transgenically rescue the locomotion defect of strong unc-69 mutants; UNC-69 is expressed in embryos, the processes and growth cones of immature neurons, and in the cell bodies of many (perhaps all) mature neurons; UNC-69 acts cell-autonomously in at least touch neurons, and perhaps all neurons; since UNC-69 binds a 19-residue conserved coiled-coil domain of UNC-76, UNC-69 and UNC-76 colocalize to neuronal puncta, unc-69 mutants phenotypically resemble unc-76, and mutations of these genes have nonallelic noncomplementation, UNC-69 and UNC-76 are likely to function as a complex. | Paper_evidence | WBPaper00000031 | |||||
| WBPaper00001345 | |||||||||
| WBPaper00002837 | |||||||||
| WBPaper00027646 | |||||||||
| WBPaper00027651 | |||||||||
| WBPaper00031100 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 18 Oct 2007 00:00:00 | ||||||||
| Automated_description | Involved in regulation of axon extension and regulation of synapse organization. Located in axon; neuronal cell body; and perinuclear region of cytoplasm. Expressed in CAN; HSN; ganglia; somatic nervous system; and touch receptor neurons. Is an ortholog of human SCOC (short coiled-coil protein). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07A5.6a | |||||||
| T07A5.6b | |||||||||
| T07A5.6c | |||||||||
| Corresponding_transcript | T07A5.6a.1 | ||||||||
| T07A5.6b.1 | |||||||||
| T07A5.6c.1 | |||||||||
| Other_sequence (59) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035291 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00062360 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4900 | ||||||||
| Expr7838 | |||||||||
| Expr1016022 | |||||||||
| Expr1032870 | |||||||||
| Expr1156304 | |||||||||
| Expr2017899 | |||||||||
| Expr2036035 | |||||||||
| Drives_construct | WBCnstr00001400 | ||||||||
| WBCnstr00012320 | |||||||||
| WBCnstr00012950 | |||||||||
| Construct_product | WBCnstr00001400 | ||||||||
| WBCnstr00012320 | |||||||||
| WBCnstr00012950 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction | WBInteraction000008990 | ||||||||
| WBInteraction000522715 | |||||||||
| WBInteraction000522716 | |||||||||
| WBInteraction000547046 | |||||||||
| Map_info | Map | III | Position | 2.3102 | Error | 0.00237 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | nDf40 | |||||||
| Positive_clone | T07A5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Negative | Outside_rearr | tnDf2 | |||||||
| Mapping_data | 2_point | 72 | |||||||
| 578 | |||||||||
| 702 | |||||||||
| 5137 | |||||||||
| 6121 | |||||||||
| Multi_point | 75 | ||||||||
| 82 | |||||||||
| 83 | |||||||||
| 84 | |||||||||
| 88 | |||||||||
| 221 | |||||||||
| 496 | |||||||||
| 522 | |||||||||
| 550 | |||||||||
| 560 | |||||||||
| 561 | |||||||||
| 600 | |||||||||
| 601 | |||||||||
| 891 | |||||||||
| 893 | |||||||||
| 1084 | |||||||||
| 1246 | |||||||||
| 1247 | |||||||||
| 1250 | |||||||||
| 1254 | |||||||||
| 1355 | |||||||||
| 1493 | |||||||||
| 1507 | |||||||||
| 1509 | |||||||||
| 1570 | |||||||||
| 1575 | |||||||||
| 1670 | |||||||||
| 1727 | |||||||||
| 1732 | |||||||||
| 1734 | |||||||||
| 1757 | |||||||||
| 1811 | |||||||||
| 1813 | |||||||||
| 1815 | |||||||||
| 1819 | |||||||||
| 2035 | |||||||||
| 2100 | |||||||||
| 2102 | |||||||||
| 2193 | |||||||||
| 2194 | |||||||||
| 2195 | |||||||||
| 2196 | |||||||||
| 2200 | |||||||||
| 2204 | |||||||||
| 2241 | |||||||||
| 2244 | |||||||||
| 2245 | |||||||||
| 2248 | |||||||||
| 2318 | |||||||||
| 2407 | |||||||||
| 2760 | |||||||||
| 2762 | |||||||||
| 2765 | |||||||||
| 3013 | |||||||||
| 3139 | |||||||||
| 3140 | |||||||||
| 3171 | |||||||||
| 3174 | |||||||||
| 3175 | |||||||||
| 3177 | |||||||||
| 3365 | |||||||||
| 3366 | |||||||||
| 3367 | |||||||||
| 3368 | |||||||||
| 3719 | |||||||||
| 3722 | |||||||||
| 3775 | |||||||||
| 3888 | |||||||||
| 3889 | |||||||||
| 3890 | |||||||||
| 3891 | |||||||||
| 4096 | |||||||||
| 4098 | |||||||||
| 4100 | |||||||||
| 5717 | |||||||||
| Pos_neg_data | 362 | ||||||||
| 669 | |||||||||
| 1597 | |||||||||
| 1620 | |||||||||
| 4768 | |||||||||
| 8638 | |||||||||
| 9454 | |||||||||
| 10533 | |||||||||
| Reference (52) | |||||||||
| Remark | on same cosmid as unc-50; genetic map data indicate unc-69 left of unc-50 JAH 01/01 | ||||||||
| Method | Gene |
