WormBase Tree Display for Gene: WBGene00006727
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| WBGene00006727 | SMap | S_parent | Sequence | F25B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ubq-1 | Person_evidence | WBPerson89 | |||||
| Sequence_name | F25B5.4 | ||||||||
| Molecular_name | F25B5.4 | ||||||||
| F25B5.4.1 | |||||||||
| CE01921 | |||||||||
| F25B5.4.2 | |||||||||
| Other_name | CELE_F25B5.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ubq-1 | ||||||||
| DB_info | Database | AceView | gene | 3H33 | |||||
| WormQTL | gene | WBGene00006727 | |||||||
| WormFlux | gene | WBGene00006727 | |||||||
| NDB | locus_tag | CELE_F25B5.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006727|UniProtKB=P0CG71 | |||||||
| family | PTHR10666 | ||||||||
| NCBI | gene | 175840 | |||||||
| RefSeq | protein | NM_171139.8 | |||||||
| SwissProt | UniProtAcc | P0CG71 | |||||||
| UniProt_GCRP | UniProtAcc | P0CG71 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubq | ||||||||
| Allele (75) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes polyubiquitin.ubq-1:lacZ expressed in all cells of embryo, L1; later mainly in muscle cells. [Graham et al. 1989; Stringham et al. 1992; PC] | ||||||||
| Strain | WBStrain00002337 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038987 | ||||||||
| 00038988 | |||||||||
| 00038989 | |||||||||
| 00038990 | |||||||||
| 00038991 | |||||||||
| 00038992 | |||||||||
| 00038993 | |||||||||
| 00038994 | |||||||||
| 00038995 | |||||||||
| 00038996 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00003587 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006725 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018660 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018659 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018661 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00006728 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Involved in programmed cell death involved in cell development and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in body wall musculature. Is an ortholog of human UBC (ubiquitin C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25B5.4 | |||||||
| Corresponding_CDS_history | F25B5.4b:wp86 | ||||||||
| F25B5.4c:wp86 | |||||||||
| F25B5.4c:wp275 | |||||||||
| Corresponding_transcript | F25B5.4.1 | ||||||||
| F25B5.4.2 | |||||||||
| Other_sequence (713) | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Chronogram1123 | ||||||||
| Expr727 | |||||||||
| Expr1383 | |||||||||
| Expr1517 | |||||||||
| Expr1014285 | |||||||||
| Expr1032803 | |||||||||
| Expr1149395 | |||||||||
| Expr2017724 | |||||||||
| Expr2035862 | |||||||||
| Drives_construct | WBCnstr00003006 | ||||||||
| WBCnstr00012507 | |||||||||
| WBCnstr00022715 | |||||||||
| WBCnstr00034191 | |||||||||
| Construct_product | WBCnstr00012507 | ||||||||
| WBCnstr00034191 | |||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (150) | |||||||||
| Interaction (1696) | |||||||||
| Map_info | Map | III | Position | -1.43071 | Error | 0.000407 | |||
| Positive | Positive_clone | F25B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| PC#1 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | No .b isoform present. [krb 030423] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
