WormBase Tree Display for Gene: WBGene00006727

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WBGene00006727	SMap	S_parent	Sequence	F25B5
	Identity	Version	1
		Name	CGC_name	ubq-1	Person_evidence	WBPerson89
			Sequence_name	F25B5.4
			Molecular_name	F25B5.4
				F25B5.4.1
				CE01921
				F25B5.4.2
			Other_name	CELE_F25B5.4	Accession_evidence	NDB	BX284603
			Public_name	ubq-1
		DB_info	Database	AceView	gene	3H33
				WormQTL	gene	WBGene00006727
				WormFlux	gene	WBGene00006727
				NDB	locus_tag	CELE_F25B5.4
				Panther	gene	CAEEL\|WormBase=WBGene00006727\|UniProtKB=P0CG71
					family	PTHR10666
				NCBI	gene	175840
				RefSeq	protein	NM_171139.8
				SwissProt	UniProtAcc	P0CG71
				UniProt_GCRP	UniProtAcc	P0CG71
		Species	Caenorhabditis elegans
		History	Version_change	1	07 Apr 2004 11:29:41	WBPerson1971	Event	Imported	Initial conversion from geneace
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	ubq
		Allele (75)
		Legacy_information	[C.elegansII] NMK. Encodes polyubiquitin.ubq-1:lacZ expressed in all cells of embryo, L1; later mainly in muscle cells. [Graham et al. 1989; Stringham et al. 1992; PC]
		Strain	WBStrain00002337
		RNASeq_FPKM (74)
		GO_annotation	00038987
			00038988
			00038989
			00038990
			00038991
			00038992
			00038993
			00038994
			00038995
			00038996
		Ortholog (29)
		Paralog	WBGene00003587	Caenorhabditis elegans	From_analysis	Panther
						WormBase-Compara
			WBGene00006725	Caenorhabditis elegans	From_analysis	Panther
						WormBase-Compara
			WBGene00018660	Caenorhabditis elegans	From_analysis	Panther
			WBGene00018659	Caenorhabditis elegans	From_analysis	Panther
			WBGene00018661	Caenorhabditis elegans	From_analysis	Panther
			WBGene00006728	Caenorhabditis elegans	From_analysis	Panther
						WormBase-Compara
		Structured_description	Automated_description	Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Involved in programmed cell death involved in cell development and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in body wall musculature. Is an ortholog of human UBC (ubiquitin C).	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	F25B5.4
		Corresponding_CDS_history	F25B5.4b:wp86
			F25B5.4c:wp86
			F25B5.4c:wp275
		Corresponding_transcript	F25B5.4.1
			F25B5.4.2
		Other_sequence	EL888362.1
			NB12739
			MJC00010_1
			TCC01207_1
			BG734318.1
			HG00052
			BUC01700_1
			HGC00768_1
			HGC03582_1
			EX914749.1
			GW409878.1
			GR367807.1
			GR367774.1
			GP02416
			GO251139.1
			AYC01952_2
			XIC01177_1
			XI00840
			HG00954
			ES411736.1
			DA04165
			GRC01373_1
			GR977203.1
			TS01138
			XIC01569_2
			GR367758.1
			CR11813
			HGC00716_1
			HG03095
			GR367686.1
			GR11887
			JI468908.1
			GR367742.1
			GR13339
			MIC07332_1
			GO249929.1
			HBC20879_1
			TMC00028_1
			MA01912
			AS03125
			PSC03474_1
			BQ804089.1
			MAC01058_2
			JO470752.1
			RSC01386_1
			ES739143.1
			ES565111.1
			CV198720.1
			GO249278.1
			CV198949.1
			ASC27793_1
			RSC01533_1
			FG583312.1
			RS06345
			DVC02699_1
			HG05667
			XIC01569_3
			ES568814.1
			Tcir_isotig19942
			PSC01689_1
			HG02247
			EV852556.1
			XI04920
			BE209052.1
			RS06038
			AYC01811_2
			XIC05559_1
			DVC00272_1
			DA00969
			GR367732.1
			Tcol_isotig02770
			TS02149
			ES570913.1
			FE909697.1
			CK726296.1
			EX911818.1
			Tcir_isotig20633
			Dviv_contig11864
			GW412209.1
			ES409226.1
			GE638482.1
			JI178657.1
			AIC00096_1
			FC815873.1
			AYC00724_1
			HGC02400_1
			BXC00527_1
			MAC01990_1
			GP00392
			XI02279
			CJC00378_1
			ES564695.1
			TSC11736_1
			EX913361.1
			BG734365.1
			GR13578
			EX009280.1
			XI03772
			AYC01860_1
			CBC07699_1
			JI250548.1
			Oden_isotig10662
			CR00688
			HBC15211_1
			ES414057.1
			Oden_isotig10663
			FE913664.1
			CR06532
			NBC00670_1
			JI257339.1
			GR367629.1
			PPC00692_1
			AYC01952_1
			MJ00561
			EL784377.1
			EV854151.1
			EX013956.1
			HG05389
			FG585888.1
			ES564800.1
			SS01416
			CRC00662_1
			GRC04250_1
			MA00932
			HG09190
			JI215513.1
			HG05502
			BXC04513_1
			TSC08166_2
			GW409056.1
			DAC00292_1
			MJ03514
			CRC01699_2
			AI055794.1
			Name_isotig00159
			HGC05675_1
			TSC01821_1
			ES568586.1
			CR10598
			ES563794.1
			OOC02868_1
			CBC00183_1
			HS00725
			GRC02781_1
			ES273482.1
			ES570479.1
			AE01389
			Acan_isotig06084
			CK855180.1
			MIC09216_1
			GW411006.1
			CRC01699_1
			ES567275.1
			CR02862
			MI00291
			GR367762.1
			AE02151
			RS07643
			TS03058
			DVC01483_1
			RS07344
			XI01279
			AI218770.1
			GR367805.1
			GW409030.1
			FE911933.1
			XI02599
			GO249560.1
			EX499860.1
			TDC01854_1
			XIC04231_1
			TV01276
			EX500635.1
			Tcir_isotig29665
			GR367575.1
			CGC01084_1
			EY472992.1
			HG05635
			FE914172.1
			ZP00025
			ASC00431_1
			OOC03971_1
			BE638360.1
			MI02391
			TS02206
			AE00933
			CBC00025_1
			DA03155
			XIC00580_2
			TSC08351_1
			FE914688.1
			MAC00370_1
			MJ00001
			ES568042.1
			GR367746.1
			PPC14444_1
			ES569897.1
			TS00854
			JI213245.1
			CBC02671_1
			EX011921.1
			EX009065.1
			GR367770.1
			PP00492
			Tcir_isotig08126
			XIC01543_1
			AF469060.1
			GR14528
			JK315819.1
			JI181012.1
			CRC11966_1
			HSC00371_1
			Oden_isotig23781
			RSC01596_1
			PP00551
			HG05406
			CBC05471_1
			ACC00772_1
			PP00054
			CJC09514_1
			EX008555.1
			Tcol_isotig02771
			JI468114.1
			HC02994
			TSC08387_1
			FE905374.1
			PT00319
			ZPC00176_1
			GO239562.1
			BE638382.1
			RSC03143_1
			GR367755.1
			HG05679
			JI169863.1
			HBC04337_1
			DVC00875_1
			TSC00699_1
			XIC00787_1
			Acan_isotig05276
			HCC00335_1
			Tcir_isotig13747
			NB06788
			HC04477
			GRC00158_2
			GR367778.1
			HGC10204_1
			MI02921
			AA294492.1
			Tcol_isotig17845
			GO250736.1
			EV850854.1
			Dviv_isotig33257
			JI250632.1
			ACC11535_1
			GRC00956_1
			ES410991.1
			FG619503.1
			JI244553.1
			JI247048.1
			CSC01134_1
			HG10041
			HG02752
			GR12173
			GW407200.1
			AS14267
			MA02815
			GO251768.1
			XI01015
			PSC01404_3
			GR367647.1
			HBC23115_1
			FE918927.1
			GRC05382_1
			PTC00096_1
			GR13064
			EY471186.1
			RSC00447_1
			CBC10363_1
			XIC05798_1
			EX501726.1
			XI05145
			XIC05786_1
			Acan_isotig06085
			EV854190.1
			CRC09310_1
			GO249765.1
			GPC01752_1
			XIC00580_1
			FE912981.1
			MIC02440_1
			HCC01027_1
			FG619502.1
			GR367566.1
			AYC01860_2
			HBC08051_1
			FG581635.1
			BMC03367_1
			PT00829
			HGC06627_1
			BG354919.1
			EX500911.1
			SSC03699_1
			ES562763.1
			CBC14798_1
			RSC03776_1
			DAC02240_1
			BXC01169_1
			AI322087.1
			EX501496.1
			DA01696
			XI00771
			OVC00628_1
			WBC01480_1
			JI469396.1
			HBC16988_1
			ASC07472_1
			Tcir_isotig32130
			AS10005
			GPC01727_1
			EX502919.1
			XI01982
			HGC00396_1
			RS07666
			ACC03657_1
			ES569485.1
			ASC00431_5
			HG03715
			NBC00873_1
			HBC10655_1
			XIC02131_1
			EH005606.1
			AF473831.1
			CR11892
			CBC09485_1
			GR367729.1
			BUC01415_1
			GR10785
			GW410266.1
			PSC01404_2
			DA01774
			JI176682.1
			CSC00019_1
			AS17904
			HBC15207_1
			TS00037
			GRC04727_1
			TSC08166_1
			ES562938.1
			GR367684.1
			BE588248.1
			CR10071
			CRC04325_1
			DA04176
			GO249403.1
			ES561988.1
			MI01915
			Tcir_isotig20806
			HBC10745_1
			SS01167
			ES562973.1
			HBC26961_1
			HG09609
			ES566431.1
			EX500044.1
			DA00970
			TX01468
			FE909438.1
			HGC12358_1
			ES570576.1
			AS07394
			GO250318.1
			GW407296.1
			ASC06743_1
			AYC03445_1
			DI02084
			DI02298
			JI460069.1
			SS01539
			DAC00860_1
			SRC01142_1
			BG485920.1
			ACC01283_1
			JI231440.1
			HG05656
			DAC00027_1
			FD514453.1
			GO253115.1
			AYC01811_1
			BMC04749_1
			HGC05393_1
			GPC01702_1
			GO249296.1
			OVC06968_1
			GO249288.1
			XIC03898_1
			EX557680.1
			FE916892.1
			XI00528
			JO472988.1
			TX01040
			FE909349.1
			FD516096.1
			JI172810.1
			HG09682
			FE909961.1
			XIC01741_1
			HBC03978_1
			PT00869
			FE912496.1
			CD203008.1
			BE491925.1
			CBC16958_1
			TSC00402_1
			XI01134
			GR17468
			GP00333
			GR14596
			MP02240
			HCC10884_1
			ACC00770_1
			XIC04120_1
			PT02757
			JI174816.1
			GO249830.1
			Dviv_isotig34109
			XIC01050_1
			BXC02911_1
			CJC00055_1
			GR367580.1
			EX500650.1
			CD203009.1
			BXC02367_1
			BM052144.1
			AYC02217_1
			MPC00179_1
			TSC00600_1
			GRC04602_1
			EX501140.1
			Oden_isotig10661
			TM02103
			MA01020
			GRC02055_1
			XI04835
			XI04172
			RSC02466_1
			MA01818
			GE639387.1
			GRC05884_1
			HG09732
			BMC11916_1
			XI05063
			AY080909.1
			DA02773
			CR08026
			PVC00038_1
			GO253016.1
			HBC02928_1
			AI061537.1
			JI221668.1
			GP00203
			GO249256.1
			PPC15008_1
			ES272912.1
			CBC12828_1
			XI00181
			HBC06282_1
			OCC00036_1
			PPC01664_1
			TDC02158_1
			ASC01476_2
			XIC01975_1
			MI08808
			MA01748
			GO252900.1
			CR04713
			GR367649.1
			CR09044
			Tcol_isotig23604
			LSC01273_1
			GO250524.1
			EX915110.1
			JI225320.1
			CR11184
			JI169529.1
			XIC05554_1
			CRC09865_1
			MP00804
			CV200606.1
			FG585287.1
			EY465250.1
			AE00602
			EX013768.1
			BXC01697_1
			ASC00950_2
			SS00088
			Dviv_isotig01184
			HC05832
			MJC02533_1
			BXC03825_1
			FG619489.1
			GRC03919_1
			FG349206.1
			TS02862
			XIC00723_1
			TCC01997_1
			GO248895.1
			GW412475.1
			AI130316.1
			HG03244
			CK394571.1
			AI363668.1
			ACC15504_1
			AI363510.1
			NB08245
			GPC02988_1
			HGC10529_1
			GRC05639_1
			HBC04391_1
			ES563957.1
			PVC01340_1
			XI00815
			ES565459.1
			CBC12156_1
			GU936304.1
			FG583199.1
			EV854197.1
			ES564938.1
			XIC00886_1
			JI250555.1
			CR08942
			JI214449.1
			GP00209
			BE217713.1
			GR17469
			RSC04585_1
			Dviv_isotig01182
			GW407510.1
			XI04430
			GP03014
			JO472000.1
			EX501034.1
			TVC01066_1
			DA00221
			PVC02581_1
			CR10201
			MIC09307
			XIC05680_1
			WBC01876_1
			GR367598.1
			EX013528.1
			MH00625
			GR367583.1
			XIC03204_1
			ZPC00074_1
			CR12385
			GW411349.1
			ES565756.1
			ASC35703_1
			DAC01076_1
			XI01177
			OVC06379_1
			FE913486.1
			FE909964.1
			HG03320
			GP00284
			Oden_isotig10660
			HBC16968_1
			EL784324.1
			TSC13775_1
			TSC09717_1
			ASC00431_2
			GO248936.1
			AE00532
			MP00018
			PP00566
			GRC02705_1
			FG581517.1
			XIC00580_5
			EV853206.1
			FG353726.1
			XIC02435_1
			OVC03928_1
			CJC06312_1
			AS02804
			AE01251
			GRC05390_1
			AA917272.1
			Oden_isotig13858
			GR367599.1
			GO252445.1
			Acan_isotig07472
			Tcol_isotig02769
			ES570622.1
			Acan_isotig22831
			CRC01001_1
			TM01058
			GT571073.1
			GR19656
			AE00793
			Hbac_isotig01052
			DVC02684_1
			FE911943.1
			PP00666
			CK726047.1
			ES570835.1
			ES740553.1
			HC02031
			CRC03163_1
			MH02453
			GR11929
			ES566917.1
			HG03274
			XIC01981_1
			HC02190
			ES561557.1
			NB06652
			AE03964
			AE04944
			GO250291.1
			NB07438
			XIC01569_1
			GO249570.1
			TSC15050_1
			FM207873.1
			ZP00007
			GR367745.1
			PPC02512_1
			XIC03736_1
			SC00698
			AI239312.1
			ES563359.1
			MHC02835_1
			XIC03351_1
			GP02464
			PPC01222_1
			FG347433.1
			ACC10680_1
			PPC05264_1
			HC06044
			GR367735.1
			NBC00873_2
			PSC00646
			AS04233
			JI465219.1
			AE04000
			TS03200
			MHC10595_1
			EX911101.1
			DR027081.1
			TCC01766_1
			XI01914
			Acan_isotig11179
			RS06367
			OCC00023_1
			FE910519.1
			GP03110
			FE909445.1
			XI03107
			AI363532.1
			XIC00580_3
			MP00387
			AI539931.1
			TSC02504_1
			MAC01058_1
			Dviv_isotig30249
			BE132600.1
			GR12347
			GR11978
			AS11930
			DA03497
			DA01163
			CR08943
			MH04071
			GR367644.1
			BE217666.1
			SR00774
			TSC09717_2
			XIC05236_1
			SRC10410_1
			Name_isotig00160
			PSC04307_1
			GR12965
			JO470964.1
			GW412085.1
			XIC02510_1
			AS02742
			GRC05572_1
			AIC00014_1
			EH005233.1
			TS03662
			JK315247.1
			TSC08051_1
			Dviv_isotig01183
			Tcir_isotig13178
			XI01190
			HGC02400_2
			FE915647.1
			FE909457.1
			XIC00607_1
			XIC05774_1
			MJ04329
			GPC00247_1
			HCC02902_1
			SSC00719_1
			MHC00581_1
			EX011306.1
			CGC00048_1
			CB036724.1
			HGC00274_1
			FE910727.1
			AI438245.1
			DA01695
			XIC01707_1
		Associated_feature (17)
	Experimental_info	RNAi_result (16)
		Expr_pattern	Chronogram1123
			Expr727
			Expr1383
			Expr1517
			Expr1014285
			Expr1032803
			Expr1149395
			Expr2017724
			Expr2035862
		Drives_construct	WBCnstr00003006
			WBCnstr00012507
			WBCnstr00022715
			WBCnstr00034191
		Construct_product	WBCnstr00012507
			WBCnstr00034191
		Microarray_results (31)
		Expression_cluster (150)
		Interaction (1696)
	Map_info	Map	III	Position	-1.43071	Error	0.000407
		Positive	Positive_clone	F25B5	Inferred_automatically	From sequence, transcript, pseudogene data
				PC#1
		Pseudo_map_position
	Reference (23)
	Remark	No .b isoform present. [krb 030423]
		Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.	CGC_data_submission
	Method	Gene