WormBase Tree Display for Gene: WBGene00006718
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| WBGene00006718 | SMap | S_parent | Sequence | C28G1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ubc-23 | Person_evidence | WBPerson89 | |||||
| Sequence_name | C28G1.1 | ||||||||
| Molecular_name | C28G1.1 | ||||||||
| C28G1.1.1 | |||||||||
| CE47376 | |||||||||
| Other_name | CELE_C28G1.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ubc-23 | ||||||||
| DB_info | Database | AceView | gene | XJ467 | |||||
| WormQTL | gene | WBGene00006718 | |||||||
| WormFlux | gene | WBGene00006718 | |||||||
| NDB | locus_tag | CELE_C28G1.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006718|UniProtKB=Q18288 | |||||||
| family | PTHR23322 | ||||||||
| NCBI | gene | 182989 | |||||||
| RefSeq | protein | NM_077097.5 | |||||||
| TREEFAM | TREEFAM_ID | TF101127 | |||||||
| TrEMBL | UniProtAcc | Q18288 | |||||||
| UniProt_GCRP | UniProtAcc | Q18288 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 22 Feb 2012 10:36:39 | WBPerson1867 | Event | Split_into | WBGene00219376 | ||||
| Split_into | WBGene00219376 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubc | ||||||||
| Allele (43) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060844 | ||||||||
| 00060845 | |||||||||
| 00060846 | |||||||||
| 00060847 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00006717 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00018586 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010433 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ubc-23 encodes a predicted conjugating enzyme (UBCs/E2s) of the ubiquitin-conjugation system; expressed in larvae and adults in cells around the pharynx and in intestinal cells. | Paper_evidence | WBPaper00005337 | |||||
| Person_evidence | WBPerson1716 | ||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 13 Jan 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and nucleus. Expressed in intestinal cell. Is an ortholog of human FAF1 (Fas associated factor 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C28G1.1 | |||||||
| Corresponding_CDS_history | C28G1.1:wp133 | ||||||||
| C28G1.1:wp184 | |||||||||
| C28G1.1:wp187 | |||||||||
| Corresponding_transcript | C28G1.1.1 | ||||||||
| Associated_feature | WBsf718654 | ||||||||
| WBsf1006259 | |||||||||
| WBsf1006260 | |||||||||
| WBsf1023477 | |||||||||
| WBsf1023478 | |||||||||
| WBsf236091 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011305 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082816 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076173 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041419 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094643 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2102 | ||||||||
| Expr1022039 | |||||||||
| Expr1145449 | |||||||||
| Expr2017709 | |||||||||
| Expr2035847 | |||||||||
| Drives_construct | WBCnstr00034196 | ||||||||
| Construct_product | WBCnstr00034196 | ||||||||
| Microarray_results | SMD_C28G1.1 | ||||||||
| 191748_at | |||||||||
| Aff_C28G1.1 | |||||||||
| GPL14144_C28G1.1_565-624_0.832_69_A | |||||||||
| GPL19516_CGZ0006487 | |||||||||
| GPL21109_C28G1.1 | |||||||||
| GPL3518_CE04118 | |||||||||
| GPL8673_C28G1_1P00390 | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction | WBInteraction000223514 | ||||||||
| WBInteraction000449665 | |||||||||
| WBInteraction000461879 | |||||||||
| Map_info | Map | X | Position | 0.421986 | |||||
| Positive | Positive_clone | C28G1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005337 | ||||||||
| WBPaper00027315 | |||||||||
| WBPaper00033175 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Jones D, Crowe E, Stevens TA, Candido EPM], 02/06/10 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
