WormBase Tree Display for Gene: WBGene00006713
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| WBGene00006713 | SMap | S_parent | Sequence | R01H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ubc-18 | Person_evidence | WBPerson89 | |||||
| Sequence_name | R01H2.6 | ||||||||
| Molecular_name | R01H2.6 | ||||||||
| R01H2.6.1 | |||||||||
| CE25067 | |||||||||
| Other_name | CELE_R01H2.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ubc-18 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubc | ||||||||
| Allele (15) | |||||||||
| Strain | WBStrain00005857 | ||||||||
| WBStrain00040591 | |||||||||
| WBStrain00005852 | |||||||||
| WBStrain00005853 | |||||||||
| WBStrain00005855 | |||||||||
| WBStrain00005856 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (28) | |||||||||
| Contained_in_operon | CEOP3408 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00002344 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006708 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00006717 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00006719 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006720 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ubc-18 encodes an E2 ubiquitin-conjugating enzyme related to human UBCH7 (OMIM:603731); UBC-18 activity is required for normal growth and reproduction, and UBC-18 functions redundantly with LIN-35/Rb and other class B synthetic multivulval (SynMuv) gene products to regulate pharyngeal morphogenesis during embryonic development; ubc-18 transcripts are detected in the germline, embryos, late larval stages, and adults, suggesting that UBC-18 may function maternally to regulate several aspects of C. elegans development; the substrates of UBC-18 are not yet known. | Paper_evidence | WBPaper00005337 | |||||
| WBPaper00005931 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Involved in determination of adult lifespan; embryonic digestive tract morphogenesis; and protein metabolic process. Acts upstream of or within animal organ morphogenesis. Predicted to be located in nucleus. Predicted to be part of ubiquitin ligase complex. Is an ortholog of human UBE2L3 (ubiquitin conjugating enzyme E2 L3) and UBE2L5 (ubiquitin conjugating enzyme E2 L5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R01H2.6 | |||||||
| Corresponding_transcript | R01H2.6.1 | ||||||||
| Other_sequence (80) | |||||||||
| Associated_feature | WBsf651163 | ||||||||
| WBsf651164 | |||||||||
| WBsf1015192 | |||||||||
| WBsf226895 | |||||||||
| WBsf226896 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr9706 | ||||||||
| Expr1011748 | |||||||||
| Expr1032796 | |||||||||
| Expr1154820 | |||||||||
| Expr1200345 | |||||||||
| Expr2017704 | |||||||||
| Expr2035842 | |||||||||
| Drives_construct | WBCnstr00034199 | ||||||||
| Construct_product | WBCnstr00034199 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (63) | |||||||||
| Map_info | Map | III | Position | -0.799521 | Error | 0.00164 | |||
| Positive | Positive_clone | R01H2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4747 | |||||||
| Pseudo_map_position | |||||||||
| Reference (42) | |||||||||
| Remark | Sequence connection from [Jones D, Crowe E, Stevens TA, Candido EPM], 02/06/10 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
