WormBase Tree Display for Gene: WBGene00006582

WBGene00006582 SMap: S_parent: Sequence: C08D8
  Identity: Version: 1
    Name: CGC_name: tmd-2
      Sequence_name: C08D8.2
      Molecular_name: C08D8.2a
        C08D8.2a.1
        CE35225
        C08D8.2b
        CE36976
        C08D8.2b.1
        C08D8.2b.2
      Other_name: CELE_C08D8.2 Accession_evidence: NDB BX284605
      Public_name: tmd-2
    DB_info: Database: AceView gene 5I819
        WormQTL gene WBGene00006582
        WormFlux gene WBGene00006582
        NDB locus_tag CELE_C08D8.2
        Panther gene CAEEL|WormBase=WBGene00006582|UniProtKB=Q8I7M7
          family PTHR10901
        NCBI gene 179216
        RefSeq protein NM_182343.6
            NM_072750.7
        TrEMBL UniProtAcc Q8I7M7
            H2KYK4
        UniProt_GCRP UniProtAcc Q8I7M7
        OMIM gene 608006
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tmd
    Allele (67)
    Strain: WBStrain00033120
      WBStrain00033152
    RNASeq_FPKM (74)
    GO_annotation: 00021712
      00021713
      00021714
      00021715
      00021716
      00021717
      00114382
      00114383
    Ortholog: WBGene00053059 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032426 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00143145 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00129140 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00193780 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222334 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1466 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4663 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15336 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4097 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17058 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7284 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17456 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g15725 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11969 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g22941 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g26378 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g29374 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2896 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-tmd-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g22263 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold630.g22264 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00738.g14988 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23555 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018820 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00799 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21394 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50110200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14966 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243402 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00277410 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258382 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0082582 Drosophila melanogaster From_analysis: OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-991019-9 Danio rerio From_analysis: OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040912-185 Danio rerio From_analysis: OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040912-41 Danio rerio From_analysis: OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-141215-22 Danio rerio From_analysis: OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-081104-348 Danio rerio From_analysis: OrthoFinder
            Panther
            PhylomeDB
      HGNC:11874 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      HGNC:6648 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      MGI:1355315 Mus musculus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      MGI:2135671 Mus musculus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:61948 Rattus norvegicus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:1308940 Rattus norvegicus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:1307236 Rattus norvegicus From_analysis: OrthoFinder
            Panther
            PhylomeDB
    Paralog: WBGene00006823 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization and myofibril assembly. Located in myofibril. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2G. Is an ortholog of human LMOD2 (leiomodin 2) and TMOD4 (tropomodulin 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0081163 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6648)
  Molecular_info: Corresponding_CDS: C08D8.2a
      C08D8.2b
    Corresponding_CDS_history: C08D8.2a:wp106
      C08D8.2b:wp106
      C08D8.2b:wp127
    Corresponding_transcript: C08D8.2a.1
      C08D8.2b.1
      C08D8.2b.2
    Other_sequence (36)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00040085 Inferred_automatically: RNAi_primary
      WBRNAi00040084 Inferred_automatically: RNAi_primary
      WBRNAi00010440 Inferred_automatically: RNAi_primary
      WBRNAi00103170 Inferred_automatically: RNAi_primary
      WBRNAi00028665 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9359
      Expr1019511
      Expr1032715
      Expr1144152
      Expr2017423
      Expr2035562
    Construct_product: WBCnstr00013924
    Microarray_results (27)
    Expression_cluster (143)
    Interaction: WBInteraction000435768
      WBInteraction000436986
      WBInteraction000564341
      WBInteraction000578814
      WBInteraction000584193
  Map_info: Map: V Position: 1.29483 Error: 0.003527
    Positive: Positive_clone: C08D8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00019653
    WBPaper00033099
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00065624
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene