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WormBase Tree Display for Gene: WBGene00032426

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Name Class

WBGene00032426SMapS_parentSequencecb25.fpc2454b
IdentityVersion2
NameCGC_nameCbr-tmd-2From_analysisInferred_from_orthology
Sequence_nameCBG11286
Molecular_nameCBG11286a
CBG11286a.1
CBP35731
CBG11286b
CBP46591
CBG11286b.1
Other_nameCBG_11286Accession_evidenceNDBHE600908
Public_nameCbr-tmd-2
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:02WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tmd-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtmd
RNASeq_FPKMWBls:000000213.0471From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.6079From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
17.7195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.81381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
10.7109From_analysisRNASeq.briggsae.WBls:0000002.control_median
11.0861From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.20317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.31864From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.28972From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.26081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.608015From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.06249From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000415.3785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.5251From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.6717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
13.9418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
16.2461From_analysisRNASeq.briggsae.WBls:0000004.control_mean
17.9938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
18.2449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.43503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
22.113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.87867From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.8089From_analysisRNASeq.briggsae.WBls:0000027.control_mean
13.9958From_analysisRNASeq.briggsae.WBls:0000027.control_median
14.9865From_analysisRNASeq.briggsae.WBls:0000027.control_mean
30.5194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003520.1824From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.2524From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
18.8914From_analysisRNASeq.briggsae.WBls:0000038.control_mean
20.5569From_analysisRNASeq.briggsae.WBls:0000038.control_median
27.8614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
28.6134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
5.83835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.5909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.9097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
6.65346From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
6.7258From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.79814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
7.98805From_analysisRNASeq.briggsae.WBls:0000041.control_mean
11.1426From_analysisRNASeq.briggsae.WBls:0000041.control_mean
14.8475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
20.0558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.69452From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.68927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.91243From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.67263From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4.76786From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
6.4324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
17.4945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
4.72024From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.17611From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.8385From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.81381From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.6901From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.9216From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00135860
00135861
Contained_in_operonCBOPA0851
Ortholog (32)
ParalogWBGene00026685Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable tropomyosin binding activity. Predicted to be involved in pointed-end actin filament capping. Is an ortholog of C. elegans tmd-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11286a
CBG11286b
Corresponding_CDS_historyCBG11286:bp194
Corresponding_transcriptCBG11286a.1
CBG11286b.1
Other_sequence (39)
Experimental_infoExpr_patternExpr1063736
Microarray_resultsGPL8303_CB6_WBGene00032426_A
GPL8303_CB6_WBGene00032426_B
GPL14143_CBG11286_1067-1126_0.892_21_C
GPL14143_CBG11286_1258-1317_0.908_11_B
GPL14143_CBG11286_1749-1808_0.754_108_A
MethodGene