WormBase Tree Display for Gene: WBGene00006582
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| WBGene00006582 | SMap | S_parent | Sequence | C08D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tmd-2 | |||||||
| Sequence_name | C08D8.2 | ||||||||
| Molecular_name | C08D8.2a | ||||||||
| C08D8.2a.1 | |||||||||
| CE35225 | |||||||||
| C08D8.2b | |||||||||
| CE36976 | |||||||||
| C08D8.2b.1 | |||||||||
| C08D8.2b.2 | |||||||||
| Other_name | CELE_C08D8.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | tmd-2 | ||||||||
| DB_info | Database | AceView | gene | 5I819 | |||||
| WormQTL | gene | WBGene00006582 | |||||||
| WormFlux | gene | WBGene00006582 | |||||||
| NDB | locus_tag | CELE_C08D8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006582|UniProtKB=Q8I7M7 | |||||||
| family | PTHR10901 | ||||||||
| NCBI | gene | 179216 | |||||||
| RefSeq | protein | NM_182343.6 | |||||||
| NM_072750.7 | |||||||||
| TrEMBL | UniProtAcc | Q8I7M7 | |||||||
| H2KYK4 | |||||||||
| UniProt_GCRP | UniProtAcc | Q8I7M7 | |||||||
| OMIM | gene | 608006 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tmd | ||||||||
| Allele (67) | |||||||||
| Strain | WBStrain00033120 | ||||||||
| WBStrain00033152 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021712 | ||||||||
| 00021713 | |||||||||
| 00021714 | |||||||||
| 00021715 | |||||||||
| 00021716 | |||||||||
| 00021717 | |||||||||
| 00114382 | |||||||||
| 00114383 | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00006823 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization and myofibril assembly. Located in myofibril. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2G. Is an ortholog of human LMOD2 (leiomodin 2) and TMOD4 (tropomodulin 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0081163 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6648) | ||||
| Molecular_info | Corresponding_CDS | C08D8.2a | |||||||
| C08D8.2b | |||||||||
| Corresponding_CDS_history | C08D8.2a:wp106 | ||||||||
| C08D8.2b:wp106 | |||||||||
| C08D8.2b:wp127 | |||||||||
| Corresponding_transcript | C08D8.2a.1 | ||||||||
| C08D8.2b.1 | |||||||||
| C08D8.2b.2 | |||||||||
| Other_sequence (36) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040085 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040084 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010440 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103170 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028665 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9359 | ||||||||
| Expr1019511 | |||||||||
| Expr1032715 | |||||||||
| Expr1144152 | |||||||||
| Expr2017423 | |||||||||
| Expr2035562 | |||||||||
| Construct_product | WBCnstr00013924 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000435768 | ||||||||
| WBInteraction000436986 | |||||||||
| WBInteraction000564341 | |||||||||
| WBInteraction000578814 | |||||||||
| WBInteraction000584193 | |||||||||
| Map_info | Map | V | Position | 1.29483 | Error | 0.003527 | |||
| Positive | Positive_clone | C08D8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00019653 | ||||||||
| WBPaper00033099 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065624 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
