WormBase Tree Display for Gene: WBGene00006580
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| WBGene00006580 | SMap | S_parent | Sequence | T23G4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tlp-1 | Person_evidence | WBPerson251 | |||||
| Sequence_name | T23G4.1 | ||||||||
| Molecular_name | T23G4.1 | ||||||||
| T23G4.1.1 | |||||||||
| CE16453 | |||||||||
| Other_name | CELE_T23G4.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tlp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Aug 2005 17:35:12 | WBPerson2970 | Name_change | Other_name | lep-3 removed | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tlp | ||||||||
| Allele (85) | |||||||||
| Legacy_information | tlp-1::gfp is expressed in nuclei [X ZHAO, Y YANG, DHA FITCH and MA HERMAN] | ||||||||
| Strain | WBStrain00024031 | ||||||||
| WBStrain00005637 | |||||||||
| WBStrain00007178 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00020076 | ||||||||
| 00020077 | |||||||||
| 00020078 | |||||||||
| 00020079 | |||||||||
| 00020080 | |||||||||
| 00020081 | |||||||||
| 00020082 | |||||||||
| 00020083 | |||||||||
| Ortholog (22) | |||||||||
| Structured_description | Concise_description | The tlp-1 gene encodes a C2H2-type zinc finger of the Sp-1-like protein family, which is required for normal asymmetry in the divisions of the T.p and T.ap cells; such asymmetry, in turn, is required for normal, rounded tail morphology in adult males. | Paper_evidence | WBPaper00005188 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 24 Jan 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable metal ion binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in several structures, including body wall musculature; rectal valve cell; somatic nervous system; tail precursor cell; and tail spike. Is an ortholog of human ZNF503 (zinc finger protein 503) and ZNF703 (zinc finger protein 703). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23G4.1 | |||||||
| Corresponding_transcript | T23G4.1.1 | ||||||||
| Other_sequence | AY046083 | ||||||||
| ACC04329_1 | |||||||||
| Oden_isotig17901 | |||||||||
| Associated_feature | WBsf652352 | ||||||||
| WBsf652353 | |||||||||
| WBsf668511 | |||||||||
| WBsf716584 | |||||||||
| WBsf978318 | |||||||||
| WBsf998450 | |||||||||
| WBsf998451 | |||||||||
| WBsf1018564 | |||||||||
| WBsf231161 | |||||||||
| Gene_product_binds (18) | |||||||||
| Transcription_factor | WBTranscriptionFactor000423 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00035884 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019099 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053970 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00006500 | ||||||||
| WBCnstr00010486 | |||||||||
| WBCnstr00012822 | |||||||||
| WBCnstr00014227 | |||||||||
| WBCnstr00015344 | |||||||||
| WBCnstr00034291 | |||||||||
| Construct_product | WBCnstr00006500 | ||||||||
| WBCnstr00010486 | |||||||||
| WBCnstr00016737 | |||||||||
| WBCnstr00034291 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | IV | Position | 10.5756 | Error | 0.001076 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | T23G4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 3990 | |||||||
| 3991 | |||||||||
| 3992 | |||||||||
| 3994 | |||||||||
| 3995 | |||||||||
| 4618 | |||||||||
| 4952 | |||||||||
| 5486 | |||||||||
| Pos_neg_data | 10625 | ||||||||
| 10629 | |||||||||
| Reference (29) | |||||||||
| Remark | Sequence connection from [source M Herman] | ||||||||
| Method | Gene |
