WormBase Tree Display for Gene: WBGene00006503

WBGene00006503 SMap: S_parent: Sequence: W06D4
  Identity: Version: 2
    Name: CGC_name: snx-3 Person_evidence: WBPerson4055
      Sequence_name: W06D4.5
      Molecular_name: W06D4.5
        W06D4.5.1
        CE16547
      Other_name: tag-157 Person_evidence: WBPerson201
        CELE_W06D4.5 Accession_evidence: NDB BX284601
      Public_name: snx-3
    DB_info: Database: AceView gene 1J640
        WormQTL gene WBGene00006503
        WormFlux gene WBGene00006503
        NDB locus_tag CELE_W06D4.5
        Panther gene CAEEL|WormBase=WBGene00006503|UniProtKB=Q9XW41
          family PTHR45963
        NCBI gene 189240
        RefSeq protein NM_060036.4
        TREEFAM TREEFAM_ID TF314980
        TrEMBL UniProtAcc Q9XW41
        UniProt_GCRP UniProtAcc Q9XW41
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 20 Jul 2007 11:50:19 WBPerson2970 Name_change: CGC_name: snx-3
                Other_name: tag-157
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snx
    Allele (20)
    Strain: WBStrain00035848
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP1528
    Ortholog (38)
    Paralog: WBGene00003086 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004927 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013354 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in endocytic recycling and late endosome to Golgi transport. Located in endosome. Expressed in several structures, including pharynx and rectal epithelial cell. Is an ortholog of human SNX12 (sorting nexin 12) and SNX3 (sorting nexin 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W06D4.5
    Corresponding_transcript: W06D4.5.1
    Other_sequence (64)
    Associated_feature: WBsf649439
      WBsf655252
      WBsf984566
      WBsf984567
      WBsf220027
  Experimental_info: RNAi_result: WBRNAi00099095 Inferred_automatically: RNAi_primary
      WBRNAi00097733 Inferred_automatically: RNAi_primary
      WBRNAi00116451 Inferred_automatically: RNAi_primary
      WBRNAi00054888 Inferred_automatically: RNAi_primary
      WBRNAi00036339 Inferred_automatically: RNAi_primary
      WBRNAi00087656 Inferred_automatically: RNAi_primary
      WBRNAi00004442 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9686
      Expr12288
      Expr1020940
      Expr1032663
      Expr1158432
      Expr2015989
      Expr2034224
    Drives_construct: WBCnstr00009251
      WBCnstr00014224
      WBCnstr00020632
    Construct_product: WBCnstr00009251
      WBCnstr00009285
      WBCnstr00009286
      WBCnstr00014224
    Microarray_results (20)
    Expression_cluster (94)
    Interaction (11)
  Map_info: Map: I Position: 3.46031 Error: 0.0066
    Positive: Positive_clone: W06D4 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4139
    Pseudo_map_position
  Reference (25)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    Previously in the rad gene class
  Method: Gene