WormBase Tree Display for Gene: WBGene00006473
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| WBGene00006473 | SMap | S_parent | Sequence | E02H1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tag-124 | Person_evidence | WBPerson201 | |||||
| Sequence_name | E02H1.3 | ||||||||
| Molecular_name | E02H1.3 | ||||||||
| E02H1.3.1 | |||||||||
| CE01538 | |||||||||
| Other_name | CELE_E02H1.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | tag-124 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00051894 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP2436 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00004248 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00022250 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | E02H1.3 encodes a putative tRNA pseudouridine synthase orthologous tohuman PUS3 and S. cerevisiae DEG1; E02H1.3 is coexpressed with pme-2 inan operon, and thus, like PME-2, may function in DNA repair. | Paper_evidence | WBPaper00005600 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 20 Feb 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis and tRNA pseudouridine synthesis. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human PUS3 (pseudouridine synthase 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | E02H1.3 | |||||||
| Corresponding_transcript | E02H1.3.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf644577 | ||||||||
| WBsf658107 | |||||||||
| WBsf221902 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062185 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002015 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012643 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030465 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043599 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025875 | ||||||||
| Expr1032642 | |||||||||
| Expr1147589 | |||||||||
| Expr2017226 | |||||||||
| Expr2035362 | |||||||||
| Drives_construct | WBCnstr00034343 | ||||||||
| Construct_product | WBCnstr00034343 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | II | Position | 1.61576 | Error | 0.000409 | |||
| Positive | Positive_clone | E02H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4591 | |||||||
| 5294 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00018177 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00054284 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
