WormBase Tree Display for Gene: WBGene00004248
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| WBGene00004248 | Evidence | Paper_evidence | WBPaper00005929 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | W06H3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pus-1 | Person_evidence | WBPerson465 | |||||
| Sequence_name | W06H3.2 | ||||||||
| Molecular_name | W06H3.2a | ||||||||
| W06H3.2a.1 | |||||||||
| CE20158 | |||||||||
| W06H3.2b | |||||||||
| CE42482 | |||||||||
| W06H3.2b.1 | |||||||||
| Other_name | CELE_W06H3.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pus-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pus | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00035512 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00006473 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00022250 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pus-1 encodes a putative tRNA pseudouridine synthase that is predicted, by phylogenetic profiling, to be mitochondrial. | Paper_evidence | WBPaper00004424 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis and tRNA pseudouridine synthesis. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in myopathy, lactic acidosis, and sideroblastic anemia 1. Is an ortholog of human PUS1 (pseudouridine synthase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111185 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15508) | ||||
| Molecular_info | Corresponding_CDS | W06H3.2a | |||||||
| W06H3.2b | |||||||||
| Corresponding_transcript | W06H3.2a.1 | ||||||||
| W06H3.2b.1 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf653494 | ||||||||
| WBsf669811 | |||||||||
| WBsf235158 | |||||||||
| WBsf235159 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082656 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054915 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075895 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019679 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062404 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082479 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033280 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028864 | ||||||||
| Expr1032096 | |||||||||
| Expr1158457 | |||||||||
| Expr2015195 | |||||||||
| Expr2033429 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (73) | |||||||||
| Interaction (44) | |||||||||
| Map_info | Map | V | Position | 11.1804 | Error | 0.004276 | |||
| Positive | Positive_clone | W06H3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4616 | |||||||
| 4584 | |||||||||
| 5496 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00018177 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00054284 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
