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WormBase Tree Display for Gene: WBGene00006446

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Name Class

WBGene00006446SMapS_parentSequenceF28F8
IdentityVersion2
NameCGC_nameatx-3
Sequence_nameF28F8.6
Molecular_nameF28F8.6
F28F8.6.1
CE09760
F28F8.6.2
F28F8.6.3
Other_nametag-70CGC_data_submission
CELE_F28F8.6Accession_evidenceNDBBX284605
Public_nameatx-3
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
204 Nov 2004 16:11:20WBPerson2970Name_changeCGC_nameatx-3
StatusLive
Gene_info (9)
Disease_infoExperimental_modelDOID:1440Homo sapiensPaper_evidenceWBPaper00038133
Accession_evidenceOMIM109150
Curator_confirmedWBPerson324
Date_last_updated11 Apr 2013 00:00:00
Potential_modelDOID:0060892Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7106)
DOID:1440Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7106)
Disease_relevanceHuman Ataxin 3 (ATXN3), is a deubiquitinating enzyme and part of the ubiquitin-proteasome system for protein degradation; mutations in ATXN3 are associated with Spinocerebellar ataxia type 3 (SCA3), also called Machado-Joseph disease, which is an autosomal dominant neurodegenerative disease characterized by progressive problems with movement, coordination and balance (ataxia), speech difficulties, uncontrolled muscle tensing (dystonia), and muscle stiffness (spasticity);Homo sapiensAccession_evidenceOMIM607047
Curator_confirmedWBPerson324
Models_disease_in_annotationWBDOannot00000139
Molecular_infoCorresponding_CDSF28F8.6
Corresponding_transcriptF28F8.6.1
F28F8.6.2
F28F8.6.3
Other_sequencePPC10479_1
JI173670.1
CR00590
CRC03012_1
Associated_featureWBsf235073
Experimental_infoRNAi_resultWBRNAi00077833Inferred_automaticallyRNAi_primary
WBRNAi00082468Inferred_automaticallyRNAi_primary
WBRNAi00031535Inferred_automaticallyRNAi_primary
WBRNAi00094701Inferred_automaticallyRNAi_primary
WBRNAi00045852Inferred_automaticallyRNAi_primary
WBRNAi00007736Inferred_automaticallyRNAi_primary
Expr_patternChronogram20
Chronogram2079
Expr4767
Expr5909
Expr5910
Expr1019245
Expr1032624
Expr1149757
Expr2009521
Expr2027758
Drives_constructWBCnstr00002432
WBCnstr00004342
WBCnstr00008031
WBCnstr00008032
WBCnstr00008182
WBCnstr00008183
WBCnstr00008184
WBCnstr00008185
Construct_productWBCnstr00008031
WBCnstr00008032
WBCnstr00008182
WBCnstr00008183
WBCnstr00008184
WBCnstr00008185
Regulate_expr_clusterWBPaper00029047:atx-3_downregulated
WBPaper00029047:atx-3_upregulated
WBPaper00038357:atx-3_regulated_basal
WBPaper00038357:atx-3_regulated_heat-shock
AntibodyWBAntibody00001221
WBAntibody00002737
Microarray_results (20)
Expression_cluster (115)
Interaction (50)
Map_infoMapVPosition8.39281Error0.005185
PositivePositive_cloneF28F8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4929
Pseudo_map_position
Reference (14)
RemarkGene name created from parsing 'genotype' field from CGC strain informationCGC_data_submission
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene