WormBase Tree Display for CDS: F28F8.6
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| F28F8.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F28F8 | |||
| Structure | Source_exons | 1 | 168 | |||
| 217 | 362 | |||||
| 413 | 567 | |||||
| 713 | 1197 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.4.19.12 | ||
| SwissProt | UniProtAcc | O17850 | ||||
| UniProt | UniProtAcc | O17850 | ||||
| UniProt_GCRP | UniProtAcc | O17850 | ||||
| AlphaFold | entry | O17850 | ||||
| NCBI_protein | GI_number | GI:3876468 | ||||
| TREEFAM | TREEFAM_ID | TF314228 | ||||
| Protein_id | CHROMOSOME_V | CAB03016 | 1 | |||
| DB_remark | ATX-3 protein; contains similarity to Pfam domains PF02099 (Josephin), PF02809 (Ubiquitin interaction motif); contains similarity to Interpro domains IPR006155 (Josephin domain), IPR033865 (Machado-Joseph disease protein) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006446 | ||||
| Corresponding_transcript | F28F8.6.1 | |||||
| F28F8.6.2 | ||||||
| F28F8.6.3 | ||||||
| Corresponding_protein | CE09760 | |||||
| Corresponding_PCR_product | cenix:11-c12 | |||||
| mv_F28F8.6 | ||||||
| sjj2_F28F8.6.1 | ||||||
| sjj_F28F8.6 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (52) | ||||||
| RNAi_result | WBRNAi00077833 | |||||
| WBRNAi00082468 | ||||||
| WBRNAi00031535 | ||||||
| WBRNAi00094701 | ||||||
| WBRNAi00045852 | ||||||
| WBRNAi00007736 | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | Ataxin-3 homolog | Accession_evidence | UniProt | SP:O17850 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf009411 | |||||
| WBsf131351 | ||||||
| Method | curated |
