WormBase Tree Display for Gene: WBGene00006385
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| WBGene00006385 | SMap | S_parent | Sequence | R119 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | taf-4 | |||||||
| Sequence_name | R119.6 | ||||||||
| Molecular_name | R119.6 | ||||||||
| R119.6.1 | |||||||||
| CE39613 | |||||||||
| Other_name | CELE_R119.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | taf-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | taf | ||||||||
| Allele | WBVar00606608 | ||||||||
| WBVar00606609 | |||||||||
| WBVar00606610 | |||||||||
| WBVar00606611 | |||||||||
| WBVar00606612 | |||||||||
| WBVar00606613 | |||||||||
| WBVar00606614 | |||||||||
| WBVar01529629 | |||||||||
| WBVar00606615 | |||||||||
| WBVar00606616 | |||||||||
| WBVar01529630 | |||||||||
| WBVar00606617 | |||||||||
| WBVar00606618 | |||||||||
| WBVar00606619 | |||||||||
| WBVar01267250 | |||||||||
| WBVar00606620 | |||||||||
| WBVar00606621 | |||||||||
| WBVar00606622 | |||||||||
| WBVar01992710 | |||||||||
| WBVar00606623 | |||||||||
| WBVar01992711 | |||||||||
| WBVar00606624 | |||||||||
| WBVar00606625 | |||||||||
| WBVar00266746 | |||||||||
| WBVar00606626 | |||||||||
| WBVar00606627 | |||||||||
| WBVar00606628 | |||||||||
| WBVar00606629 | |||||||||
| WBVar00606630 | |||||||||
| WBVar00606631 | |||||||||
| WBVar00606632 | |||||||||
| WBVar00606633 | |||||||||
| WBVar00606634 | |||||||||
| WBVar00606635 | |||||||||
| WBVar00606636 | |||||||||
| WBVar00606637 | |||||||||
| WBVar00606638 | |||||||||
| WBVar01265028 | |||||||||
| WBVar00606639 | |||||||||
| WBVar01402426 | |||||||||
| WBVar01270583 | |||||||||
| WBVar01835298 | |||||||||
| WBVar00232878 | |||||||||
| WBVar00003091 | |||||||||
| WBVar00003096 | |||||||||
| WBVar00003101 | |||||||||
| WBVar01711312 | |||||||||
| WBVar00254913 | |||||||||
| WBVar01711313 | |||||||||
| WBVar00324017 | |||||||||
| WBVar01711314 | |||||||||
| WBVar00092614 | |||||||||
| WBVar00324018 | |||||||||
| WBVar01271694 | |||||||||
| WBVar00324019 | |||||||||
| WBVar00324020 | |||||||||
| WBVar01782656 | |||||||||
| WBVar00324021 | |||||||||
| WBVar01474548 | |||||||||
| WBVar01474549 | |||||||||
| WBVar00324022 | |||||||||
| WBVar01474550 | |||||||||
| WBVar00324023 | |||||||||
| WBVar00324024 | |||||||||
| WBVar01272805 | |||||||||
| WBVar01988300 | |||||||||
| WBVar02005846 | |||||||||
| WBVar02005847 | |||||||||
| WBVar02005848 | |||||||||
| WBVar01269472 | |||||||||
| WBVar02005849 | |||||||||
| WBVar01403366 | |||||||||
| WBVar01403378 | |||||||||
| WBVar01898004 | |||||||||
| WBVar01499786 | |||||||||
| WBVar02028067 | |||||||||
| WBVar01403389 | |||||||||
| WBVar01497400 | |||||||||
| WBVar01403400 | |||||||||
| WBVar01403411 | |||||||||
| WBVar01639968 | |||||||||
| WBVar02088496 | |||||||||
| WBVar01639969 | |||||||||
| WBVar02151158 | |||||||||
| WBVar01639970 | |||||||||
| WBVar01499619 | |||||||||
| WBVar01639971 | |||||||||
| WBVar01639972 | |||||||||
| WBVar01680536 | |||||||||
| WBVar01680537 | |||||||||
| WBVar01955587 | |||||||||
| WBVar01268361 | |||||||||
| WBVar01929917 | |||||||||
| WBVar01929918 | |||||||||
| WBVar01929919 | |||||||||
| WBVar00095211 | |||||||||
| WBVar00095212 | |||||||||
| WBVar01929920 | |||||||||
| WBVar00095213 | |||||||||
| WBVar01929921 | |||||||||
| WBVar01761527 | |||||||||
| WBVar01761528 | |||||||||
| WBVar00235212 | |||||||||
| WBVar00147317 | |||||||||
| WBVar00147318 | |||||||||
| WBVar00147319 | |||||||||
| WBVar00147320 | |||||||||
| WBVar00147321 | |||||||||
| WBVar02125922 | |||||||||
| WBVar00147322 | |||||||||
| WBVar01622487 | |||||||||
| WBVar00147324 | |||||||||
| WBVar01266139 | |||||||||
| WBVar00147325 | |||||||||
| WBVar00147327 | |||||||||
| WBVar00147329 | |||||||||
| WBVar00147330 | |||||||||
| WBVar00606604 | |||||||||
| WBVar00147331 | |||||||||
| WBVar00606605 | |||||||||
| WBVar00147332 | |||||||||
| WBVar00606606 | |||||||||
| WBVar00147333 | |||||||||
| WBVar00606607 | |||||||||
| Strain | WBStrain00036170 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | taf-4 encodes a TAFII (TBP(TATA-binding protein)-associated factor) that is orthologous to human TAF4 (hTAFII130); TAF-4 is predicted to be a component of the TFIID mRNA transcription complex and is generally required for early embryonic mRNA transcription; consistent with this observation, taf-4(RNAi) results in embryonic lethality at the ~100-cell stage with little cell differentiation, similar to the loss of AMA-1/RNA polymerase II activity; TAF-4 is detected in nuclei in the adult germline, oocytes, and embryo, from the 2-cell stage through early morphogenesis. | Paper_evidence | WBPaper00004890 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 26 Jan 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in several processes, including determination of adult lifespan; regulation of mitotic cell cycle, embryonic; and transcription initiation at RNA polymerase II promoter. Located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in spermatogenic failure 13. Is an ortholog of human TAF4B (TATA-box binding protein associated factor 4b). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070182 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11538) | ||||
| Molecular_info | Corresponding_CDS | R119.6 | |||||||
| Corresponding_CDS_history | R119.6:wp153 | ||||||||
| Corresponding_transcript | R119.6.1 | ||||||||
| Other_sequence (39) | |||||||||
| Associated_feature | WBsf643011 | ||||||||
| WBsf980924 | |||||||||
| WBsf982485 | |||||||||
| WBsf1009079 | |||||||||
| WBsf217127 | |||||||||
| WBsf217128 | |||||||||
| Transcription_factor | WBTranscriptionFactor000206 | ||||||||
| WBTranscriptionFactor000442 | |||||||||
| Experimental_info | RNAi_result (40) | ||||||||
| Expr_pattern | Expr1027683 | ||||||||
| Expr1032582 | |||||||||
| Expr1155419 | |||||||||
| Expr2017214 | |||||||||
| Expr2035350 | |||||||||
| Construct_product | WBCnstr00005322 | ||||||||
| WBCnstr00005323 | |||||||||
| Antibody | WBAntibody00000409 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction (90) | |||||||||
| Map_info (3) | |||||||||
| Reference (17) | |||||||||
| Remark | Sequence connection from [source: A Walker] | ||||||||
| This gene was previously called taf-5. [krb 020614] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
