WormBase Tree Display for Gene: WBGene00006333
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| WBGene00006333 | SMap | S_parent | Sequence | C48C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sup-28 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C48C5.t6 | ||||||||
| Molecular_name | C48C5.t6 | ||||||||
| Other_name | rtw-8 | ||||||||
| CELE_C48C5.T6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | sup-28 | ||||||||
| DB_info | Database | NDB | locus_tag | CELE_C48C5.T6 | |||||
| NCBI | gene | 192050 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001272 | |||||||
| Gene_class | sup | ||||||||
| Reference_allele | WBVar00144527 | ||||||||
| Allele (13) | |||||||||
| Legacy_information | e2058 (pka sup-21) : amber suppressor suppresses tra-3(e1107) dpy-20(e2017) but not unc-13(e450); no gross phenotype alone; probably alteration in tRNATrp gene. ES3 in presence of tra-3(e1107) ME3. NA1. | ||||||||
| See also e2226 | |||||||||
| Strain | WBStrain00004514 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | sup-28 encodes a tRNA-Trp that was initially identified in screens for suppressors of amber mutations in the sex determination gene tra-3; sup-28 mutations behave as informational suppressors, inserting tryptophan at premature stop codons; however, as sup-28 mutations do not suppress all known amber mutations, sup-28 may be expressed in a tissue-specific manner; sup-28 is an X-linked gene, but does not appear to be dosage compensated, as it is expressed at lower levels in XO males when compared to XX hermaphrodites. | Paper_evidence | WBPaper00001009 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Expressed in body wall musculature; hermaphrodite gonad; hypodermis; intestine; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | C48C5.t6 | |||||||
| Experimental_info | Expr_pattern | Expr13224 | |||||||
| Expression_cluster | WBPaper00065975:P-body_vs_oocyte_depleted | ||||||||
| WBPaper00065975:P-body_vs_WholeAnimal_depleted | |||||||||
| Interaction | WBInteraction000000021 | ||||||||
| WBInteraction000000022 | |||||||||
| WBInteraction000002805 | |||||||||
| WBInteraction000030353 | |||||||||
| WBInteraction000031804 | |||||||||
| WBInteraction000031805 | |||||||||
| Map_info | Map | X | Position | 0.451293 | Error | 0.00257 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | D1073 | |||||||
| TP3 | |||||||||
| Mapping_data | 2_point | 3179 | |||||||
| Multi_point | 3209 | ||||||||
| 3212 | |||||||||
| 3288 | |||||||||
| 4714 | |||||||||
| 5638 | |||||||||
| Reference (14) | |||||||||
| Remark | BlastN of the embl sequence to genomic gives 100% matches including the flanking sequences to D1073.t1, disitnguishing it from nearby sup-33.[sdm 0005] | ||||||||
| sequence connection to D1073.t1 was incorrect. C48C5.t6(aka D1073.t2) | Person_evidence | WBPerson261 | |||||||
| Method | Gene |
